Files in Nanostring-Biostats/GeoDiff

Count model based differential expression and normalization on GeoMx RNA data

.Rbuildignore

.github/workflows/main.yml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/NBth.R R/NBthDE.R R/NBthDE_nllopt.R R/NBth_nllopt.R R/NBthmDE.R R/NBthmDE_feat.R R/NBthmDE_rcovnll.R R/PoisBG.R R/PoisthNorm.R R/PoisthNorm_nllopt.R R/RcppExports.R R/ScoreTest.R R/aggreprobe.R R/data.R README.md

data/NBthDEmod2.rda

data/NBthmDEmod2.rda

data/NBthmDEmod2slope.rda

data/demoData.rda

data/kidney.rda

man/BGScoreTest-methods.Rd man/BGScoreTest_sp-methods.Rd man/DENBth-methods.Rd man/NBthDEmod2.Rd man/NBthmDEmod2.Rd man/NBthmDEmod2slope.Rd man/QuanRange-methods.Rd man/aggreprobe-methods.Rd man/coefNBth-methods.Rd man/contrastNBth-methods.Rd man/demoData.Rd man/diagPoisBG-methods.Rd man/fitNBth-methods.Rd man/fitNBthDE-methods.Rd man/fitNBthmDE-methods.Rd man/fitPoisBG-methods.Rd man/fitPoisBG_sp-methods.Rd man/fitPoisthNorm-methods.Rd man/fitPoisthNorm_sp-methods.Rd man/kidney.Rd reqs.md specs.md

src-i386/GeoDiff.h

src-i386/Makevars

src-i386/Makevars.win

src-i386/NBthDEOptPara.cpp

src-i386/NBthmDEGrad.cpp

src-i386/NBthmDEMH.cpp

src-i386/NBthmDEOptPara.cpp

src-i386/NBthmDEOptU.cpp

src-i386/PoisthNormOptPara.cpp

src-i386/RcppExports.cpp

src-i386/dnbinom_mu_vec.cpp

src/GeoDiff.h

src/Makevars

src/Makevars.win

src/NBthDEOptPara.cpp

src/NBthmDEGrad.cpp

src/NBthmDEMH.cpp

src/NBthmDEOptPara.cpp

src/NBthmDEOptU.cpp

src/PoisthNormOptPara.cpp

src/RcppExports.cpp

src/dnbinom_mu_vec.cpp

tests/testthat.R tests/testthat/test-DENBth.R tests/testthat/test-QuanRange.R tests/testthat/test-aggreprobe.R tests/testthat/test-coefNBth.R tests/testthat/test-contrastNBth.R tests/testthat/test-diagPoisBG.R tests/testthat/test-fitNBth.R tests/testthat/test-fitNBthDE.R tests/testthat/test-fitNBthmDE.R tests/testthat/test-fitPoisBG.R tests/testthat/test-fitPoisthNorm.R tests/testthat/test-scoretest.R

vignettes/.gitignore

vignettes/Workflow_WTA_kidney.Rmd

Nanostring-Biostats/GeoDiff documentation built on April 11, 2024, 5:31 a.m.