R/data.R

In Nanostring-Biostats/GeoDiff: Count model based differential expression and normalization on GeoMx RNA data

#' A demo dataset for GeoMx Cancer Transcriptome Atlas (CTA) panel
#'
#' A demo dataset contains 88 ROIs and 8707 features
#'
#' @docType data
#' @usage data(demoData)
#' @format A NanoStringGeoMxSet S4 object with 8707 features and 88 samples
#' @keywords datasets
#' @examples
#' data(demoData)
#'
"demoData"

#' A demo dataset for GeoMx Human Whole Transcriptome Atlas (WTA) panel
#'
#' A demo dataset contains 276 ROIs and 18642 features
#'
#' @docType data
#' @usage data(kidney)
#' @format A NanoStringGeoMxSet S4 object with 18642 features and 276 samples
#' @keywords datasets
#' @examples
#' data(kidney)
#'
"kidney"

#' A demo example output list returned by function fitNBthDE
#'
#' A list used to demonstrate the function coefNBth
#'
#' @docType data
#' @usage data(NBthDEmod2)
#' @format A list
#' @keywords datasets
#' @examples
#' data(NBthDEmod2)
#'
"NBthDEmod2"

#' A demo example output list returned by function fitNBthmDE
#'
#' A list used to demonstrate the function coefNBth
#'
#' @docType data
#' @usage data(NBthmDEmod2)
#' @format A list
#' @keywords datasets
#' @examples
#' data(NBthmDEmod2)
#'
"NBthmDEmod2"

#' A demo example output list returned by function fitNBthmDE
#'
#' A list used to demonstrate the function coefNBth
#'
#' @docType data
#' @usage data(NBthmDEmod2slope)
#' @format A list
#' @keywords datasets
#' @examples
#' data(NBthmDEmod2slope)
#'
"NBthmDEmod2slope"