API for Nanostring-Biostats/GeoDiff
Count model based differential expression and normalization on GeoMx RNA data

Global functions
BGScoreTest Man page
BGScoreTest,NanoStringGeoMxSet-method Man page
BGScoreTest,matrix-method Man page
BGScoreTest_sp Man page
BGScoreTest_sp,matrix-method Man page
DENBth Man page
DENBth,list-method Man page
NBthDE_paraOptall Source code
NBthDE_paraOptfeat Source code
NBthDE_scalenll Source code
NBthDEmod2 Man page
NBth_paranll Source code
NBth_paraopt Source code
NBth_scalenll Source code
NBth_thnll Source code
NBthmDE_fparaOptfeat Source code
NBthmDE_grad Source code
NBthmDE_gradM Source code
NBthmDE_mh Source code
NBthmDE_uOpt Source code
NBthmDEmod2 Man page
NBthmDEmod2slope Man page
NBthm_rcovnll Source code
NBthm_rcovnlliWp Source code
PoisthNorm_paraOptall Source code
PoisthNorm_paraOptfeat Source code
PoisthNorm_scalenll Source code
QuanRange Man page
QuanRange,NanoStringGeoMxSet-method Man page
QuanRange,matrix-method Man page
aggreprobe Man page
aggreprobe,NanoStringGeoMxSet-method Man page
aggreprobe,matrix-method Man page
coefNBth Man page
coefNBth,list-method Man page
condi_u Source code
contrastNBth Man page
contrastNBth,list-method Man page
demoData Man page
diagPoisBG Man page
diagPoisBG,NanoStringGeoMxSet-method Man page
diagPoisBG,list-method Man page
dnbinom_mu_vec Source code
fitNBth Man page
fitNBth,NanoStringGeoMxSet-method Man page
fitNBth,matrix-method Man page
fitNBthDE Man page
fitNBthDE,NanoStringGeoMxSet-method Man page
fitNBthDE,matrix-method Man page
fitNBthmDE Man page
fitNBthmDE,NanoStringGeoMxSet-method Man page
fitNBthmDE,matrix-method Man page
fitNBthmDEfeat Source code
fitPoisBG Man page
fitPoisBG,NanoStringGeoMxSet-method Man page
fitPoisBG,matrix-method Man page
fitPoisBG_sp Man page
fitPoisBG_sp,matrix-method Man page
fitPoisthNorm Man page
fitPoisthNorm,NanoStringGeoMxSet-method Man page
fitPoisthNorm,matrix-method Man page
fitPoisthNorm_sp Man page
fitPoisthNorm_sp,matrix-method Man page
kidney Man page
Nanostring-Biostats/GeoDiff documentation built on Jan. 28, 2024, 7:24 p.m.