API for Nanostring-Biostats/GeoDiff
Count model based differential expression and normalization on GeoMx RNA data
| Global functions | |
|---|---|
| BGScoreTest | Man page |
| BGScoreTest,NanoStringGeoMxSet-method | Man page |
| BGScoreTest,matrix-method | Man page |
| BGScoreTest_sp | Man page |
| BGScoreTest_sp,matrix-method | Man page |
| DENBth | Man page |
| DENBth,list-method | Man page |
| NBthDE_paraOptall | Source code |
| NBthDE_paraOptfeat | Source code |
| NBthDE_scalenll | Source code |
| NBthDEmod2 | Man page |
| NBth_paranll | Source code |
| NBth_paraopt | Source code |
| NBth_scalenll | Source code |
| NBth_thnll | Source code |
| NBthmDE_fparaOptfeat | Source code |
| NBthmDE_grad | Source code |
| NBthmDE_gradM | Source code |
| NBthmDE_mh | Source code |
| NBthmDE_uOpt | Source code |
| NBthmDEmod2 | Man page |
| NBthmDEmod2slope | Man page |
| NBthm_rcovnll | Source code |
| NBthm_rcovnlliWp | Source code |
| PoisthNorm_paraOptall | Source code |
| PoisthNorm_paraOptfeat | Source code |
| PoisthNorm_scalenll | Source code |
| QuanRange | Man page |
| QuanRange,NanoStringGeoMxSet-method | Man page |
| QuanRange,matrix-method | Man page |
| aggreprobe | Man page |
| aggreprobe,NanoStringGeoMxSet-method | Man page |
| aggreprobe,matrix-method | Man page |
| coefNBth | Man page |
| coefNBth,list-method | Man page |
| condi_u | Source code |
| contrastNBth | Man page |
| contrastNBth,list-method | Man page |
| demoData | Man page |
| diagPoisBG | Man page |
| diagPoisBG,NanoStringGeoMxSet-method | Man page |
| diagPoisBG,list-method | Man page |
| dnbinom_mu_vec | Source code |
| fitNBth | Man page |
| fitNBth,NanoStringGeoMxSet-method | Man page |
| fitNBth,matrix-method | Man page |
| fitNBthDE | Man page |
| fitNBthDE,NanoStringGeoMxSet-method | Man page |
| fitNBthDE,matrix-method | Man page |
| fitNBthmDE | Man page |
| fitNBthmDE,NanoStringGeoMxSet-method | Man page |
| fitNBthmDE,matrix-method | Man page |
| fitNBthmDEfeat | Source code |
| fitPoisBG | Man page |
| fitPoisBG,NanoStringGeoMxSet-method | Man page |
| fitPoisBG,matrix-method | Man page |
| fitPoisBG_sp | Man page |
| fitPoisBG_sp,matrix-method | Man page |
| fitPoisthNorm | Man page |
| fitPoisthNorm,NanoStringGeoMxSet-method | Man page |
| fitPoisthNorm,matrix-method | Man page |
| fitPoisthNorm_sp | Man page |
| fitPoisthNorm_sp,matrix-method | Man page |
| kidney | Man page |
