Man pages for Nanostring-Biostats/GeoDiff
Count model based differential expression and normalization on GeoMx RNA data
| aggreprobe-methods | Generate aggregated counts of probes for the same target |
| BGScoreTest-methods | Testing for features above the background |
| BGScoreTest_sp-methods | Testing for features above the background, multiple slides... |
| coefNBth-methods | Generate list of Wald test inference results on model... |
| contrastNBth-methods | Generate list of Wald test inference results on user... |
| demoData | A demo dataset for GeoMx Cancer Transcriptome Atlas (CTA)... |
| DENBth-methods | Generate DE table using the inference list generated by... |
| diagPoisBG-methods | Perform diagnosis on Poisson background model |
| fitNBthDE-methods | Negative Binomial threshold model for differential expression... |
| fitNBthmDE-methods | Negative Binomial threshold mixed model for differential... |
| fitNBth-methods | Negative Binomial threshold model |
| fitPoisBG-methods | Estimate Poisson background model for either single slide or... |
| fitPoisBG_sp-methods | Estimate Poisson background model for multiple slides |
| fitPoisthNorm-methods | Poisson threshold model based normalization-log2... |
| fitPoisthNorm_sp-methods | Poisson threshold model based normalization-log2... |
| kidney | A demo dataset for GeoMx Human Whole Transcriptome Atlas... |
| NBthDEmod2 | A demo example output list returned by function fitNBthDE |
| NBthmDEmod2 | A demo example output list returned by function fitNBthmDE |
| NBthmDEmod2slope | A demo example output list returned by function fitNBthmDE |
| QuanRange-methods | Compute Quantile Range |
