API for Nanostring-Biostats/SpatialDecon
Deconvolution of mixed cells from spatial and/or bulk gene expression data
| Global functions | |
|---|---|
| SpatialDecon-package | Man page |
| TIL_barplot | Man page Source code |
| algorithm2 | Source code |
| cellcols | Man page |
| collapseCellTypes | Man page Source code |
| convertCellScoresToCounts | Source code |
| convertCellTypes | Source code |
| create_profile_matrix | Man page Source code |
| deconLNR | Source code |
| deriveWeights | Source code |
| derive_GeoMx_background | Man page Source code |
| download_profile_matrix | Man page Source code |
| flagOutliers | Source code |
| florets | Man page Source code |
| mean.resid.sd | Man page |
| mergeTumorIntoX | Man page Source code |
| mini_geomx_dataset | Man page |
| mini_singleCell_dataset | Man page |
| nsclc | Man page |
| reverseDecon | Man page Source code |
| runCollapseCellTypes | Man page |
| runCollapseCellTypes,NanoStringGeoMxSet-method | Man page |
| runErrorModel | Man page Source code |
| runMergeTumorIntoX | Man page |
| runMergeTumorIntoX,NanoStringGeoMxSet-method | Man page |
| runReverseDecon | Man page |
| runReverseDecon,NanoStringGeoMxSet-method | Man page |
| runspatialdecon | Man page |
| runspatialdecon,NanoStringGeoMxSet-method | Man page |
| runspatialdecon,Seurat-method | Man page |
| safeTME | Man page |
| safeTME.matches | Man page |
| spatialdecon | Man page Source code |
| tidy_X_and_Y | Source code |
