experiment_setup: Setup DAISIE experiment parameter combinations
In Neves-P/utilSIE: Utility Functions for DAISIE

Description Usage Arguments Value Author(s)

Returns a matrix containing all possible permutations of parameters input by the user. Each line of the matrix can then be used to initialize an experiment.

experiment_setup(time = c(2, 3, 6), M = 1000, lac = c(7.48223 *
  10^-6, 2.24467e-05, 7.48223e-05), mu = c(1), K = c(100/13500,
  30/13500, 10/13500), gam = c(0.001), laa = c(1),
  island_ontogeny = "beta", replicates = 1000, mu_min = 0.1,
  mu_max = mu_min + mu_min * 0.1, Amax = c(13500), Apeak = c(0.1),
  Asharpness = c(1), Atotalage = c(9), divdepmodel = 1)

`time`	Numeric vector containing length of the simulation in time units. For example, if an island is know to be 4 million years old, setting time = 4 will simulate entire life span of the island; setting time = 2 will stop the simulation at the mid-life of the island.
`M`	Numeric vector containing the size of the mainland pool, i.e the number of species that can potentially colonize the island
`lac`	Numeric vector containing the cladogenesis rate (lambda^c)
`mu`	Numeric vector containing the extinction rate. Used only on non ontogeny scenarios.
`K`	Numeric vector containing the carrying capacity (clade level). Set `K = Inf` for no diversity dependence.
`gam`	Numeric vector containing the immigration rate (gamma)
`laa`	Numeric vector containing the anagenesis rate (lambda^a)
`island_ontogeny`	Vector of strings or `NULL` indicating type of island ontogeny process. Can be `"beta"`. For no ontogeny `NULL` is used.
`replicates`	Numeric vector specifying how many replicates should be run for each experiment
`mu_min`	Numeric vector containing the minimum extinction when area is at peak, used only on ontogeny scenarios
`mu_max`	Numeric vector containing the extinction rate when current area is 0.10 of maximum area, used only on ontogeny scenarios
`Amax`	Numeric vector containing the maximum area, used only on ontogeny scenarios
`Apeak`	Numeric vector containing the value from 0 to 1 indicating where in the island's history the peak area is achieved, used only on ontogeny scenarios
`Asharpness`	Numeric vector containing the sharpness of peak, used only on ontogeny scenarios
`Atotalage`	Numeric vector containing the total island age, used only on ontogeny scenarios
`divdepmodel`	Numeric vector specifying the type of diversity dependence. `divdepmodel = "CS"` runs a model with clade-specific carrying capacity, where diversity-dependence operates only within single clades, i.e. only among species originating from the same mainland colonist. Option divdepmodel = 'IW' runs a model with island-wide carrying capacity, where diversity-dependence operates within and among clades.