API for Ni-Ar/niar
Nice Interactive Analysis with R
| Global functions | |
|---|---|
| Rename_EpiProfile_colnames | Man page Source code |
| align_DNA_fasta | Man page Source code |
| calculate_jaccard | Source code |
| check_fasta | Man page Source code |
| check_file | Man page Source code |
| col_JS_divergence | Man page Source code |
| col_freq | Man page Source code |
| col_sub_abs | Man page Source code |
| count_snps_in_bins | Man page Source code |
| dds2counts | Man page Source code |
| df2JSD | Man page Source code |
| df2bits | Man page Source code |
| df2mat | Man page Source code |
| df2pfm | Man page Source code |
| df2ppm | Man page Source code |
| df2pwm | Man page Source code |
| encode_onehot | Man page Source code |
| ensembl_id_2_entrez | Man page Source code |
| ensembl_id_2_gene_name | Man page Source code |
| fasta2df | Man page Source code |
| fasta2pim | Man page Source code |
| filter_dds | Man page Source code |
| find_containing_bin | Man page Source code |
| gene_name_2_ensembl_id | Man page Source code |
| generate_single_nt_variants | Source code |
| get_alphabet_palette | Man page Source code |
| get_hPTM_FC | Man page Source code |
| get_kmers | Source code |
| get_mouse_tissue_devel_tbl | Man page Source code |
| gimme_PSI_expr_corr | Man page Source code |
| gimme_expr_mat | Man page Source code |
| gimme_mart | Man page Source code |
| gimme_psi_mat | Man page Source code |
| grep_gene_expression | Man page Source code |
| grep_psi | Man page Source code |
| gtf_attributes_as_cols | Man page Source code |
| gtf_attributes_as_list | Man page Source code |
| guess_alphabet | Man page Source code |
| guess_species | Man page Source code |
| hallgrimskirkja_plot | Man page Source code |
| inclusion_tbl2bed | Man page Source code |
| longest_common_prefix | Man page Source code |
| longest_most_abundant_common_suffix | Man page Source code |
| multiply_csv | Man page Source code |
| parse_bed_vcf_isec | Source code |
| permutate_seq | Man page Source code |
| permutationz | Man page Source code |
| plotALLU_hPTM | Man page Source code |
| plotMA_hPTM | Man page Source code |
| plot_JSD_logo | Man page Source code |
| plot_best_corr_genes | Man page |
| plot_bits_logo | Man page Source code |
| plot_corr_dist | Man page |
| plot_corr_gene_expr_psi | Man page Source code |
| plot_corr_heatmap | Man page |
| plot_hist_dPSI | Man page Source code |
| plot_mouse_tissue_devel | Man page |
| plot_pwm_as_bars | Man page Source code |
| plot_pwm_as_hm | Man page Source code |
| plot_rmats_summary | Man page Source code |
| plot_rudimentary_JSD_logo | Man page Source code |
| plot_rudimentary_logo | Man page Source code |
| plot_samples_PSI | Man page Source code |
| print_seq_perm | Man page Source code |
| read_EpiProfile_histone_ratio | Man page Source code |
| read_bed | Man page Source code |
| read_bed_vcf_isec | Source code |
| read_bed_vcf_isec1 | Source code |
| read_bed_vcf_isec2 | Source code |
| read_gtf | Man page Source code |
| read_rmats | Man page Source code |
| read_rmats_summary | Man page Source code |
| read_vst_tbl | Man page Source code |
| renumber_logo_seq_breaks | Man page Source code |
| res2df | Man page Source code |
| save_counts | Man page Source code |
| save_df_gsea_list | Man page Source code |
| show_dds_counts_freq | Man page Source code |
| showme_MA | Source code |
| showme_PCA2D | Man page Source code |
| slop_bed | Man page Source code |
| test_regexes | Man page Source code |
| tidy_hPTMs | Man page Source code |
| tidy_vst_expr | Man page Source code |
| tidy_vst_psi | Man page Source code |
