Files in Ni-Ar/niar

Nice Interactive Analysis with R

LICENSE.md R/biomart_utils.R R/deseq2_utils.R R/dim_reduction.R R/epiprofile_plot.R R/epiprofile_utils.R R/fasta_utils.R R/general_utils.R R/genomics_files_utils.R R/pwm_utils.R R/sequence_utils.R R/snp_utils_plot.R R/utils_rmats.R R/vst_plot.R R/vst_utils.R README.md man/Rename_EpiProfile_colnames.Rd man/align_DNA_fasta.Rd man/check_fasta.Rd man/check_file.Rd man/col_JS_divergence.Rd man/col_freq.Rd man/col_sub_abs.Rd man/count_snps_in_bins.Rd man/dds2counts.Rd man/df2JSD.Rd man/df2bits.Rd man/df2mat.Rd man/df2pfm.Rd man/df2ppm.Rd man/df2pwm.Rd man/encode_onehot.Rd man/ensembl_id_2_entrez.Rd man/ensembl_id_2_gene_name.Rd man/fasta2df.Rd man/fasta2pim.Rd man/filter_dds.Rd man/find_containing_bin.Rd man/gene_name_2_ensembl_id.Rd man/get_alphabet_palette.Rd man/get_hPTM_FC.Rd man/get_mouse_tissue_devel_tbl.Rd man/gimme_PSI_expr_corr.Rd man/gimme_expr_mat.Rd man/gimme_mart.Rd man/gimme_psi_mat.Rd man/grep_gene_expression.Rd man/grep_psi.Rd man/gtf_attributes_as_cols.Rd man/gtf_attributes_as_list.Rd man/guess_alphabet.Rd man/guess_species.Rd man/hallgrimskirkja_plot.Rd man/inclusion_tbl2bed.Rd man/longest_common_prefix.Rd man/longest_most_abundant_common_suffix.Rd man/multiply_csv.Rd man/permutate_seq.Rd man/permutationz.Rd man/plotALLU_hPTM.Rd man/plotMA_hPTM.Rd man/plot_JSD_logo.Rd man/plot_best_corr_genes.Rd man/plot_bits_logo.Rd man/plot_corr_dist.Rd man/plot_corr_gene_expr_psi.Rd man/plot_corr_heatmap.Rd man/plot_hist_dPSI.Rd man/plot_mouse_tissue_devel.Rd man/plot_pwm_as_bars.Rd man/plot_pwm_as_hm.Rd man/plot_rmats_summary.Rd man/plot_rudimentary_JSD_logo.Rd man/plot_rudimentary_logo.Rd man/plot_samples_PSI.Rd man/print_seq_perm.Rd man/read_EpiProfile_histone_ratio.Rd man/read_bed.Rd man/read_gtf.Rd man/read_rmats.Rd man/read_rmats_summary.Rd man/read_vst_tbl.Rd man/renumber_logo_seq_breaks.Rd man/res2df.Rd man/save_counts.Rd man/save_df_gsea_list.Rd man/show_dds_counts_freq.Rd man/showme_PCA2D.Rd man/slop_bed.Rd man/test_regexes.Rd man/tidy_hPTMs.Rd man/tidy_vst_expr.Rd man/tidy_vst_psi.Rd vignettes/Introduction_Dim_Reduction.Rmd vignettes/Mouse_Development_ENCODE_AS_exploration.Rmd