Files in OHDSI/EvidenceSynthesis
Synthesizing Causal Evidence in a Distributed Research Network
.Rbuildignore
.classpath
.github/workflows/R_CMD_check_Hades.yaml
.github/workflows/R_CMD_check_main_weekly.yaml
.gitignore
.project
CRAN-SUBMISSION
DESCRIPTION
EvidenceSynthesis.Rproj
NAMESPACE
NEWS.md
R/BayesianBiasCorrection.R
R/BayesianMetaAnalysis.R
R/BayesianSynthesis.R
R/CohortMethod.R
R/EmpiricalCalibration.R
R/EvidenceSynthesis.R
R/FixedEffectMetaAnalysis.R
R/LikelihoodApproximation.R
R/MetaAnalysis.R
R/Plots.R
R/Simulation.R
R/Utilities.R
R/likelihoods-data.R
README.md
_pkgdown.yml
compare_versions
cran-comments.md
data/ncLikelihoods.rda
data/ooiLikelihoods.rda
deploy.sh
docs/404.html
docs/articles/BayesianBiasCorrection.html
docs/articles/BayesianBiasCorrection_files/figure-html/unnamed-chunk-10-1.png
docs/articles/BayesianBiasCorrection_files/figure-html/unnamed-chunk-11-1.png
docs/articles/BayesianBiasCorrection_files/figure-html/unnamed-chunk-4-1.png
docs/articles/NonNormalEffectSynthesis.html
docs/articles/NonNormalEffectSynthesis_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/NonNormalEffectSynthesis_files/anchor-sections-1.0/anchor-sections.css
docs/articles/NonNormalEffectSynthesis_files/anchor-sections-1.0/anchor-sections.js
docs/articles/NonNormalEffectSynthesis_files/figure-html/unnamed-chunk-10-1.png
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docs/articles/NonNormalEffectSynthesis_files/header-attrs-2.5/header-attrs.js
docs/articles/NonNormalMetaAnalyis.html
docs/articles/NonNormalMetaAnalyis_files/figure-html/unnamed-chunk-10-1.png
docs/articles/NonNormalMetaAnalyis_files/figure-html/unnamed-chunk-11-1.png
docs/articles/NonNormalMetaAnalyis_files/figure-html/unnamed-chunk-6-1.png
docs/articles/VideoVignette.html
docs/articles/VideoVignette_files/figure-html/unnamed-chunk-10-1.png
docs/articles/VideoVignette_files/figure-html/unnamed-chunk-14-1.png
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docs/articles/VideoVignette_files/figure-html/unnamed-chunk-9-1.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/EvidenceSynthesis-package.html
docs/reference/Rplot001.png
docs/reference/approximateHierarchicalNormalPosterior.html
docs/reference/approximateLikelihood.html
docs/reference/approximateSimplePosterior.html
docs/reference/biasCorrectionInference.html
docs/reference/computeBayesianMetaAnalysis.html
docs/reference/computeConfidenceInterval.html
docs/reference/computeFixedEffectMetaAnalysis.html
docs/reference/createSimulationSettings.html
docs/reference/customFunction.html
docs/reference/detectApproximationType.html
docs/reference/fitBiasDistribution.html
docs/reference/index.html
docs/reference/ncLikelihoods-1.png
docs/reference/ncLikelihoods.html
docs/reference/ooiLikelihoods-1.png
docs/reference/ooiLikelihoods.html
docs/reference/plotBiasCorrectionInference.html
docs/reference/plotBiasDistribution.html
docs/reference/plotCovariateBalances-1.png
docs/reference/plotCovariateBalances.html
docs/reference/plotEmpiricalNulls-1.png
docs/reference/plotEmpiricalNulls.html
docs/reference/plotLikelihoodFit-1.png
docs/reference/plotLikelihoodFit.html
docs/reference/plotMcmcTrace-1.png
docs/reference/plotMcmcTrace.html
docs/reference/plotMetaAnalysisForest-1.png
docs/reference/plotMetaAnalysisForest.html
docs/reference/plotPerDbMcmcTrace-1.png
docs/reference/plotPerDbMcmcTrace.html
docs/reference/plotPerDbPosterior-1.png
docs/reference/plotPerDbPosterior.html
docs/reference/plotPosterior-1.png
docs/reference/plotPosterior.html
docs/reference/plotPreparedPs-1.png
docs/reference/plotPreparedPs.html
docs/reference/preparePsPlot.html
docs/reference/sequentialFitBiasDistribution.html
docs/reference/simulatePopulations.html
docs/reference/skewNormal.html
docs/reference/supportsJava8.html
docs/sitemap.xml
extras/.gitignore
extras/BayesianBiasCorrection.pdf
extras/EvidenceSynthesis.pdf
extras/NonNormalEffectSynthesis.pdf
extras/PackageMaintenance.R
extras/VideoVignette.R
extras/build.xml
extras/testRobustMetaAnalysis.R
inst/java/EvidenceSynthesis.jar
java/EvidenceSynthesis.jardesc
java/org/ohdsi/data/CoxData.java
java/org/ohdsi/data/SortedCoxData.java
java/org/ohdsi/likelihood/CoxPartialLikelihood.java
java/org/ohdsi/likelihood/EmpiricalModelLikelihood.java
java/org/ohdsi/mcmc/Analysis.java
java/org/ohdsi/mcmc/Runner.java
java/org/ohdsi/metaAnalysis/CoxDataModel.java
java/org/ohdsi/metaAnalysis/DataModel.java
java/org/ohdsi/metaAnalysis/EmpiricalDataModel.java
java/org/ohdsi/metaAnalysis/ExtendingEmpiricalDataModel.java
java/org/ohdsi/metaAnalysis/GammaOnPrecisionPrior.java
java/org/ohdsi/metaAnalysis/HalfCauchyOnStdDevPrior.java
java/org/ohdsi/metaAnalysis/HalfNormalOnStdDevPrior.java
java/org/ohdsi/metaAnalysis/JointAnalysis.java
java/org/ohdsi/metaAnalysis/LocationHyperPrior.java
java/org/ohdsi/metaAnalysis/MetaAnalysis.java
java/org/ohdsi/metaAnalysis/NormalDataModel.java
java/org/ohdsi/metaAnalysis/ParametricDataModel.java
java/org/ohdsi/metaAnalysis/RobustMetaAnalysis.java
java/org/ohdsi/metaAnalysis/ScalePrior.java
java/org/ohdsi/metaAnalysis/SkewNormalDataModel.java
java/org/ohdsi/metaAnalysis/TLocationHyperPrior.java
java/org/ohdsi/simpleDesign/ProfileHierarchicalNormalAnalysis.java
java/org/ohdsi/simpleDesign/ProfileNormalAnalysis.java
man/EvidenceSynthesis-package.Rd
man/approximateHierarchicalNormalPosterior.Rd
man/approximateLikelihood.Rd
man/approximateSimplePosterior.Rd
man/biasCorrectionInference.Rd
man/computeBayesianMetaAnalysis.Rd
man/computeConfidenceInterval.Rd
man/computeFixedEffectMetaAnalysis.Rd
man/createSimulationSettings.Rd
man/customFunction.Rd
man/detectApproximationType.Rd
man/fitBiasDistribution.Rd
man/ncLikelihoods.Rd
man/ooiLikelihoods.Rd
man/plotBiasCorrectionInference.Rd
man/plotBiasDistribution.Rd
man/plotCovariateBalances.Rd
man/plotEmpiricalNulls.Rd
man/plotLikelihoodFit.Rd
man/plotMcmcTrace.Rd
man/plotMetaAnalysisForest.Rd
man/plotPerDbMcmcTrace.Rd
man/plotPerDbPosterior.Rd
man/plotPosterior.Rd
man/plotPreparedPs.Rd
man/preparePsPlot.Rd
man/sequentialFitBiasDistribution.Rd
man/simulatePopulations.Rd
man/skewNormal.Rd
man/supportsJava8.Rd
tests/testthat.R
tests/testthat/resources/pooledFixedFxEstimate.rds
tests/testthat/resources/pooledRandomFxEstimate.rds
tests/testthat/resources/populations.rds
tests/testthat/test-balance.R
tests/testthat/test-biasCorrection.R
tests/testthat/test-java.R
tests/testthat/test-llAproximations.R
tests/testthat/test-nonNormalMetaAnalysis.R
tests/testthat/test-plots.R
tests/testthat/test-simpleBayesianModel.R
vignettes/.gitignore
vignettes/BayesianBiasCorrection.Rmd
vignettes/BayesianBiasCorrection_cache/html/__packages
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