Files in OHDSI/Legend
Large-Scale Evidence Generation and Evaluation in a Network of Databases
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Documents/CohortDefinition.bib
Documents/CohortDefinitionTable.csv
Documents/ComparisonToIndividualRcts.csv
Documents/GenerateProtocol.R
Documents/GuidingPrinciples.docx
Documents/GuidingPrinciples.md
Documents/HctzCtdBalance/Balance_CCAE.rds
Documents/HctzCtdBalance/Balance_Optum.rds
Documents/HctzCtdBalance/Balance_Panther.rds
Documents/HctzCtdBalance/Balance_matching_CCAE.rds
Documents/HctzCtdBalance/Balance_matching_Optum.rds
Documents/HctzCtdBalance/Balance_matching_Panther.rds
Documents/LEGEND data model V07.docx
Documents/LEGEND data model V07.pptx
Documents/LEGEND data model V08.docx
Documents/LEGEND data model V08.pptx
Documents/LegendEndnote.Data/rdb/csort.MYD
Documents/LegendEndnote.Data/rdb/csort.MYI
Documents/LegendEndnote.Data/rdb/csort.frm
Documents/LegendEndnote.Data/rdb/db.opt
Documents/LegendEndnote.Data/rdb/jterms.MYD
Documents/LegendEndnote.Data/rdb/jterms.MYI
Documents/LegendEndnote.Data/rdb/jterms.frm
Documents/LegendEndnote.Data/rdb/misc.MYD
Documents/LegendEndnote.Data/rdb/misc.MYI
Documents/LegendEndnote.Data/rdb/misc.frm
Documents/LegendEndnote.Data/rdb/pdf_index.MYD
Documents/LegendEndnote.Data/rdb/pdf_index.MYI
Documents/LegendEndnote.Data/rdb/pdf_index.frm
Documents/LegendEndnote.Data/rdb/refs.MYD
Documents/LegendEndnote.Data/rdb/refs.MYI
Documents/LegendEndnote.Data/rdb/refs.frm
Documents/LegendEndnote.Data/rdb/refs_ext.MYD
Documents/LegendEndnote.Data/rdb/refs_ext.MYI
Documents/LegendEndnote.Data/rdb/refs_ext.frm
Documents/LegendEndnote.Data/rdb/reftype.frm
Documents/LegendEndnote.Data/rdb/terms.MYD
Documents/LegendEndnote.Data/rdb/terms.MYI
Documents/LegendEndnote.Data/rdb/terms.frm
Documents/LegendEndnote.Data/tdb/csort.MYD
Documents/LegendEndnote.Data/tdb/csort.MYI
Documents/LegendEndnote.Data/tdb/csort.frm
Documents/LegendEndnote.Data/tdb/db.opt
Documents/LegendEndnote.Data/tdb/jterms.MYD
Documents/LegendEndnote.Data/tdb/jterms.MYI
Documents/LegendEndnote.Data/tdb/jterms.frm
Documents/LegendEndnote.Data/tdb/misc.MYD
Documents/LegendEndnote.Data/tdb/misc.MYI
Documents/LegendEndnote.Data/tdb/misc.frm
Documents/LegendEndnote.Data/tdb/pdf_index.MYD
Documents/LegendEndnote.Data/tdb/pdf_index.MYI
Documents/LegendEndnote.Data/tdb/pdf_index.frm
Documents/LegendEndnote.Data/tdb/refs.MYD
Documents/LegendEndnote.Data/tdb/refs.MYI
Documents/LegendEndnote.Data/tdb/refs.frm
Documents/LegendEndnote.Data/tdb/refs_ext.MYD
Documents/LegendEndnote.Data/tdb/refs_ext.MYI
Documents/LegendEndnote.Data/tdb/refs_ext.frm
Documents/LegendEndnote.Data/tdb/terms.MYD
Documents/LegendEndnote.Data/tdb/terms.MYI
Documents/LegendEndnote.Data/tdb/terms.frm
Documents/LegendEndnote.enl
Documents/OHDSI Legend Protocol Depression V01.docx
Documents/OHDSI Legend Protocol Depression V02.docx
Documents/OHDSI Legend Protocol Depression V03.docx
Documents/OHDSI Legend Protocol Hypertension V01.docx
Documents/OHDSI Legend Protocol Hypertension V02.docx
Documents/OHDSI Legend Protocol Hypertension V03.docx
Documents/PhenotypeDefinitions.Rmd
Documents/PhenotypeDefinitions.md
Documents/SupplementaryMaterial.pdf
Documents/SystematicReviewEstimates.csv
Documents/bpData/BalanceAdjustBpPsMatching.csv
Documents/bpData/BalanceAdjustBpPsStratification.csv
Documents/bpData/BalancePsMatching.csv
Documents/bpData/BalancePsStratification.csv
Documents/bpData/HrsData_all_PsMatching.csv
Documents/bpData/HrsData_all_PsStratification.csv
Documents/bpData/README.md
Documents/nature-publishing-group-vancouver.csl
Legend.Rproj
NAMESPACE
R/Chronographs.R
R/CohortMethod.R
R/CovariateBalance.R
R/CreateCohorts.R
R/CreateExposureCohorts.R
R/CreateOutcomeCohorts.R
R/CustomCmDataObjectBuilding.R
R/Export.R
R/Feasibility.R
R/FileManipulation.R
R/FilterByExposureCohortsSize.R
R/Incidence.R
R/Legend.R
R/Main.R
R/MetaAnalysis.R
R/PositiveControlSynthesis.R
R/PrioExposureCovariateBuilder.R
R/SubgroupCovariateBuilder.R
R/UploadDataToDb.R
README.md
compare_versions
deploy.sh
extras/AdjustForBloodPressure.R
extras/BetaBlockerSensitivityAnalyses/AddBpToPantherRun.R
extras/BetaBlockerSensitivityAnalyses/ComparisonsBb.csv
extras/BetaBlockerSensitivityAnalyses/Functions.R
extras/BetaBlockerSensitivityAnalyses/RestoreFromArchive.R
extras/BetaBlockerSensitivityAnalyses/SensitivityAnalyses.R
extras/BloodPressureFunctions.R
extras/CCAE_connect.csv
extras/CensoringSensAnalysis/.Rbuildignore
extras/CensoringSensAnalysis/CensoringSensAnalysis.Rproj
extras/CensoringSensAnalysis/DESCRIPTION
extras/CensoringSensAnalysis/NAMESPACE
extras/CensoringSensAnalysis/R/CombineOldAndNewData.R
extras/CensoringSensAnalysis/R/CreateCohorts.R
extras/CensoringSensAnalysis/R/Main.R
extras/CensoringSensAnalysis/R/PlotsAndTables.R
extras/CensoringSensAnalysis/R/hello.R
extras/CensoringSensAnalysis/extras/CodeToRun.R
extras/CensoringSensAnalysis/extras/PackageMaintenance.R
extras/CensoringSensAnalysis/inst/cohorts/Chlorthalidone.json
extras/CensoringSensAnalysis/inst/cohorts/Hydrochlorothiazide.json
extras/CensoringSensAnalysis/inst/settings/CohortsToCreate.csv
extras/CensoringSensAnalysis/inst/settings/rEnvironmentSnapshot.csv
extras/CensoringSensAnalysis/inst/sql/sql_server/Chlorthalidone.sql
extras/CensoringSensAnalysis/inst/sql/sql_server/CreateCohortTable.sql
extras/CensoringSensAnalysis/inst/sql/sql_server/Hydrochlorothiazide.sql
extras/CensoringSensAnalysis/man/hello.Rd
extras/CheckBpBalance.R
extras/CheckRowIds.R
extras/ChordDiagrams.R
extras/CodeForFeasabilityAssessment.R
extras/CodeToRun.R
extras/CodeToRunCoordinatingCenter.R
extras/CompareFeasabilityAssessments.R
extras/DeleteFilesNewTar.R
extras/DoseEras.sql
extras/ForAcesAndArbsPaper.R
extras/ForBook.R
extras/ForComparisonToRctPaper.R
extras/ForHydrochlorathiazideVsChlorthaladonePaper.R
extras/ForMethodsPaper.R
extras/ForSymposium.R
extras/HotSwapping.R
extras/InstallDependencies.R
extras/InternalDiagnostics.R
extras/LEGEND_HTN_Guidance_comparisons_connect.csv
extras/LEGEND_HTN_Guidance_comparisons_edges.csv
extras/LEGEND_Meta_connect.csv
extras/LegendBasicViewer/LegendBasicViewer.Rproj
extras/LegendBasicViewer/Table1Specs.csv
extras/LegendBasicViewer/global.R
extras/LegendBasicViewer/server.R
extras/LegendBasicViewer/ui.R
extras/LegendBasicViewer/www/favicon.ico
extras/LegendBasicViewer/www/logo.png
extras/LegendMedCentral/DataPulls.R
extras/LegendMedCentral/LegendMedCentral.Rproj
extras/LegendMedCentral/MyArticle.Rmd
extras/LegendMedCentral/PlotsAndTables.R
extras/LegendMedCentral/Sweave.sty
extras/LegendMedCentral/Table1Specs.csv
extras/LegendMedCentral/bibliography.bib
extras/LegendMedCentral/blank_template.tex
extras/LegendMedCentral/dbPaper.rmd
extras/LegendMedCentral/dbPaperPinp.Rmd
extras/LegendMedCentral/global.R
extras/LegendMedCentral/jss.bst
extras/LegendMedCentral/missing.pdf
extras/LegendMedCentral/ohdsi.bib
extras/LegendMedCentral/pnas-markdown.cls
extras/LegendMedCentral/pnas-new.cls
extras/LegendMedCentral/pnas-ohdsi.cls
extras/LegendMedCentral/pnas.csl
extras/LegendMedCentral/pnasresearcharticle.sty
extras/LegendMedCentral/server.R
extras/LegendMedCentral/template.Rnw
extras/LegendMedCentral/ui.R
extras/LegendMedCentral/widetext.sty
extras/LegendMedCentral/widgets.R
extras/LegendMedCentral/www/favicon.ico
extras/LegendMedCentral/www/logo.png
extras/LspsAnalyses/Functions.R
extras/LspsAnalyses/LspsAnalyses.R
extras/LspsAnalyses/ManualCovariates.xlsx
extras/MinimizeFileSizes.R
extras/PackageMaintenance.R
extras/PartialExport.R
extras/PostHocAnalyses.R
extras/PotassiumFunctions.R
extras/PotassiumOutcomeAnalysis.R
extras/ShareLoad.R
inst/cohorts/Abdominal pain.json
inst/cohorts/Abnormal weight gain.json
inst/cohorts/Abnormal weight loss.json
inst/cohorts/Acute liver injury.json
inst/cohorts/Acute myocardial infarction.json
inst/cohorts/Acute pancreatitis.json
inst/cohorts/Acute renal failure.json
inst/cohorts/All-cause mortality.json
inst/cohorts/Alopecia.json
inst/cohorts/Anaphylactoid reaction.json
inst/cohorts/Anemia.json
inst/cohorts/Angioedema.json
inst/cohorts/Anxiety.json
inst/cohorts/Bradycardia.json
inst/cohorts/Cardiac arrhythmia.json
inst/cohorts/Cardiovascular disease.json
inst/cohorts/Cardiovascular-related mortality.json
inst/cohorts/Chest pain or angina.json
inst/cohorts/Chronic kidney disease.json
inst/cohorts/Constipation.json
inst/cohorts/Coronary heart disease.json
inst/cohorts/Cough.json
inst/cohorts/Decreased libido.json
inst/cohorts/Delirium.json
inst/cohorts/Dementia.json
inst/cohorts/Depression.json
inst/cohorts/Diarrhea.json
inst/cohorts/Edema.json
inst/cohorts/End stage renal disease.json
inst/cohorts/Fall.json
inst/cohorts/Fracture.json
inst/cohorts/Gastrointestinal bleeding.json
inst/cohorts/Gout.json
inst/cohorts/Headache.json
inst/cohorts/Heart failure.json
inst/cohorts/Hemorrhagic stroke.json
inst/cohorts/Hepatic failure.json
inst/cohorts/Hospitalization with heart failure.json
inst/cohorts/Hospitalization with preinfarction syndrome.json
inst/cohorts/Hyperkalemia.json
inst/cohorts/Hyperprolactinemia.json
inst/cohorts/Hypokalemia.json
inst/cohorts/Hypomagnesemia.json
inst/cohorts/Hyponatremia.json
inst/cohorts/Hypotension.json
inst/cohorts/Hypothyroidism.json
inst/cohorts/Impotence.json
inst/cohorts/Insomnia.json
inst/cohorts/Ischemic stroke.json
inst/cohorts/Kidney disease.json
inst/cohorts/Malignant neoplasm.json
inst/cohorts/Measured renal dysfunction.json
inst/cohorts/Nausea.json
inst/cohorts/Neutropenia or agranulocytosis.json
inst/cohorts/Open-angle glaucoma.json
inst/cohorts/Rash.json
inst/cohorts/Rhabdomyolysis.json
inst/cohorts/Seizure.json
inst/cohorts/Stroke.json
inst/cohorts/Sudden cardiac death.json
inst/cohorts/Suicide and suicidal ideation.json
inst/cohorts/Syncope.json
inst/cohorts/Thrombocytopenia.json
inst/cohorts/Tinnitus.json
inst/cohorts/Transient ischemic attack.json
inst/cohorts/Type 2 diabetes mellitus.json
inst/cohorts/Unconfirmed open-angle glaucoma.json
inst/cohorts/Vasculitis.json
inst/cohorts/Venous thromboembolic events .json
inst/cohorts/Ventricular arrhythmia and sudden cardiac death.json
inst/cohorts/Vertigo.json
inst/cohorts/Vomiting.json
inst/settings/ExposuresOfInterest.csv
inst/settings/Indications.csv
inst/settings/NegativeControls.csv
inst/settings/OutcomesOfInterest.csv
inst/settings/Table1Specs.csv
inst/settings/cmAnalysisListAsymDepression.json
inst/settings/cmAnalysisListAsymHypertension.json
inst/settings/cmAnalysisListDepression.json
inst/settings/cmAnalysisListHypertension.json
inst/settings/cmAnalysisListInteractionsDepression.json
inst/settings/cmAnalysisListInteractionsHypertension.json
inst/settings/rEnvironmentSnapshot.csv
inst/sql/sql_server/Abdominal pain.sql
inst/sql/sql_server/Abnormal weight gain.sql
inst/sql/sql_server/Abnormal weight loss.sql
inst/sql/sql_server/Acute liver injury.sql
inst/sql/sql_server/Acute myocardial infarction.sql
inst/sql/sql_server/Acute pancreatitis.sql
inst/sql/sql_server/Acute renal failure.sql
inst/sql/sql_server/All-cause mortality.sql
inst/sql/sql_server/Alopecia.sql
inst/sql/sql_server/Anaphylactoid reaction.sql
inst/sql/sql_server/Anemia.sql
inst/sql/sql_server/Angioedema.sql
inst/sql/sql_server/Anxiety.sql
inst/sql/sql_server/Bradycardia.sql
inst/sql/sql_server/Cardiac arrhythmia.sql
inst/sql/sql_server/Cardiovascular disease.sql
inst/sql/sql_server/Cardiovascular-related mortality.sql
inst/sql/sql_server/Chest pain or angina.sql
inst/sql/sql_server/Chronic kidney disease.sql
inst/sql/sql_server/Constipation.sql
inst/sql/sql_server/Coronary heart disease.sql
inst/sql/sql_server/Cough.sql
inst/sql/sql_server/CreateCohortPairs.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateExposureCohortsDepression.sql
inst/sql/sql_server/CreateExposureCohortsHypertension.sql
inst/sql/sql_server/CreateSubgroups.sql
inst/sql/sql_server/Decreased libido.sql
inst/sql/sql_server/Delirium.sql
inst/sql/sql_server/Dementia.sql
inst/sql/sql_server/Depression.sql
inst/sql/sql_server/Diarrhea.sql
inst/sql/sql_server/DropSubgroupTempTables.sql
inst/sql/sql_server/Edema.sql
inst/sql/sql_server/End stage renal disease.sql
inst/sql/sql_server/ExposureLengthImputation.sql
inst/sql/sql_server/Fall.sql
inst/sql/sql_server/Fracture.sql
inst/sql/sql_server/Gastrointestinal bleeding.sql
inst/sql/sql_server/GetExposureCohorts.sql
inst/sql/sql_server/GetFilterConcepts.sql
inst/sql/sql_server/GetInjectedOutcomes.sql
inst/sql/sql_server/GetOutcomes.sql
inst/sql/sql_server/GetPriorExposureCovariates.sql
inst/sql/sql_server/GetSubgroups.sql
inst/sql/sql_server/Gout.sql
inst/sql/sql_server/Headache.sql
inst/sql/sql_server/Heart failure.sql
inst/sql/sql_server/Hemorrhagic stroke.sql
inst/sql/sql_server/Hepatic failure.sql
inst/sql/sql_server/Hospitalization with heart failure.sql
inst/sql/sql_server/Hospitalization with preinfarction syndrome.sql
inst/sql/sql_server/Hyperkalemia.sql
inst/sql/sql_server/Hyperprolactinemia.sql
inst/sql/sql_server/Hypokalemia.sql
inst/sql/sql_server/Hypomagnesemia.sql
inst/sql/sql_server/Hyponatremia.sql
inst/sql/sql_server/Hypotension.sql
inst/sql/sql_server/Hypothyroidism.sql
inst/sql/sql_server/Impotence.sql
inst/sql/sql_server/Insomnia.sql
inst/sql/sql_server/Ischemic stroke.sql
inst/sql/sql_server/Kidney disease.sql
inst/sql/sql_server/Malignant neoplasm.sql
inst/sql/sql_server/Measured renal dysfunction.sql
inst/sql/sql_server/Nausea.sql
inst/sql/sql_server/NegativeControls.sql
inst/sql/sql_server/Neutropenia or agranulocytosis.sql
inst/sql/sql_server/Open-angle glaucoma.sql
inst/sql/sql_server/Rash.sql
inst/sql/sql_server/Rhabdomyolysis.sql
inst/sql/sql_server/SampleCohortsForPsFeasibility.sql
inst/sql/sql_server/SampleCohortsForSubgroupFeasibility.sql
inst/sql/sql_server/Seizure.sql
inst/sql/sql_server/Stroke.sql
inst/sql/sql_server/Sudden cardiac death.sql
inst/sql/sql_server/Suicide and suicidal ideation.sql
inst/sql/sql_server/Syncope.sql
inst/sql/sql_server/Thrombocytopenia.sql
inst/sql/sql_server/Tinnitus.sql
inst/sql/sql_server/Transient ischemic attack.sql
inst/sql/sql_server/Type 2 diabetes mellitus.sql
inst/sql/sql_server/Unconfirmed open-angle glaucoma.sql
inst/sql/sql_server/UnionExposureCohorts.sql
inst/sql/sql_server/Vasculitis.sql
inst/sql/sql_server/Venous thromboembolic events .sql
inst/sql/sql_server/Ventricular arrhythmia and sudden cardiac death.sql
inst/sql/sql_server/Vertigo.sql
inst/sql/sql_server/Vomiting.sql
man/Legend.Rd
man/assessPhenotypes.Rd
man/assessPropensityModels.Rd
man/computeCovariateBalance.Rd
man/computeIncidence.Rd
man/createAnalysesDetails.Rd
man/createExposureCohorts.Rd
man/createIndicesOnDatabase.Rd
man/createOutcomeCohorts.Rd
man/createPriorExposureCovariateSettings.Rd
man/createSubgroupCovariateSettings.Rd
man/doMetaAnalysis.Rd
man/execute.Rd
man/exportResults.Rd
man/fetchAllDataFromServer.Rd
man/fetchChronographData.Rd
man/filterByExposureCohortsSize.Rd
man/generateAllCohortMethodDataObjects.Rd
man/getDbPriorExposuresCovariateData.Rd
man/getDbSubgroupCovariateData.Rd
man/runCohortMethod.Rd
man/synthesizePositiveControls.Rd
man/unstageDb.Rd
man/uploadResultsToDatabase.Rd
