R/regulators_per_organism.R

In OceaneCsn/DIANE: DIANE

#' List of regulator genes for a number of model organisms
#'
#'Those particular genes are known to be transcriptionnal actors,
#'and are needed to infer gene regulatory networks in DIANE.
#'
#' @source 
#' \describe{
#'  \item{For Arabidopsis thaliana}{\url{http://plntfdb.bio.uni-potsdam.de/v3.0/index.php?sp_id=ATH}}
#'  \item{For Human}{\url{http://humantfs.ccbr.utoronto.ca/download.php}}
#'  \item{Mus musculus}{\url{http://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/download}}
#'  \item{Drosophilia melanogaster}{\url{https://flybase.org/reports/FBgg0000745.html}}
#'  \item{C elegans}{\url{http://www.wormbook.org/chapters/www_transcriptionalregulation.2/transregulate.html#sec5-1}}
#'  \item{E coli}{\url{http://regulondb.ccg.unam.mx/menu/download/datasets/index.jsp}}
#'  }
#' @format A named list with the following elements:
#' \describe{
#'  \item{Arabidopsis thaliana}{Character vector of the known transcriptional regulators in Arabidopsis thaliana}
#'  \item{Homo sapiens}{Character vector of the known transcription factors in Human}
#'  \item{Mus musculus}{Character vector of the known transcription factors in Mouse}
#'  \item{Drosophilia melanogaster}{Character vector of the known transcription factors in Drosophilia melanogaster}
#'  \item{Caenorhabditis elegans}{Character vector of the known transcription factors in C elegans}
#'  \item{Escherichia coli}{Character vector of the known transcription factors and sigma elements in E coli K12}
#' }
#' @examples
#' {
#'  print(head(regulators_per_organism[["Arabidopsis thaliana"]]))
#'  print(head(regulators_per_organism[["Homo sapiens"]]))
#'  print(head(regulators_per_organism[["Mus musculus"]]))
#'  print(head(regulators_per_organism[["Drosophilia melanogaster"]]))
#'  print(head(regulators_per_organism[["Caenorhabditis elegans"]]))
#'  print(head(regulators_per_organism[["Escherichia coli"]]))
#' }
"regulators_per_organism"