AddAUC: Calculate AUC for marker list

In OliverDietrich/SeuratHelper: Helper functions to assist scRNA-seq data analysis from a Seurat object

Calculate AUC for marker list

Description

Calculate the area under the curve (AUC) for each gene set for each observation using the AUCell package

Usage

AddAUC(
  object = NULL,
  features = NULL,
  name = NULL,
  assay = NULL,
  slot = "data",
  force.recalc = FALSE
)

Arguments

object	Seurat object
features	A list of vectors of features for expression programs; each entry should be a vector of feature names
name	Name of the feature set (e.g. celltype) used as assay name
assay	Name of assay to use
slot	Name of slot to use
force.recalc	Wheter to force recalculation

Value

SeuratObject with AUC added as 'assay'

OliverDietrich/SeuratHelper documentation built on Jan. 20, 2024, 2:57 a.m.