RunMNN: Perform Mutual Nearest Neighbor Integration

In OliverDietrich/SeuratHelper: Helper functions to assist scRNA-seq data analysis from a Seurat object

Perform Mutual Nearest Neighbor Integration

Description

Runs the fastMNN implementation of the MNN algorithm from the batchelor package.

Usage

RunMNN(
  object = NULL,
  batch = NULL,
  features = NULL,
  name = "mnn",
  transfer.reconstructed.assay = FALSE,
  force.recalc = FALSE,
  assay = DefaultAssay(object),
  slot = "data",
  ...
)

Arguments

object	Seurat object
features	Set of features to use in MNN
name	Name of the dimensional reduction object
transfer.reconstructed.assay	Whether to transfer reconstructed counts into a new assay
assay	Assay of feature counts
slot	Slot for feature counts

OliverDietrich/SeuratHelper documentation built on Jan. 20, 2024, 2:57 a.m.