plot_markers_embedding: Plot cell type markers on embedding

In OliverDietrich/SeuratHelper: Helper functions to assist scRNA-seq data analysis from a Seurat object

Plot cell type markers on embedding

Description

Plot cell type markers on embedding

Usage

plot_markers_embedding(
  object,
  markers = NULL,
  embedding = tail(names(object@reductions), 1),
  pt.aggr = TRUE,
  pt.aggr.breaks = 300,
  pt.size = 0.5,
  pt.stroke = 0.1,
  pt.shape = 16,
  nrow = floor(sqrt(length(markers))),
  assay = NULL,
  slot = "data",
  cells = NULL,
  scale = TRUE,
  markers.max = 100,
  pl.title = NULL,
  col.title = NULL
)

Arguments

object	SeuratObject
markers	Character vector of marker genes
embedding	Embedding name (slot in reductions)
pt.size	Point size
nrow	Number of rows
cells	Character vector of cells to plot

Value

plot

OliverDietrich/SeuratHelper documentation built on Jan. 20, 2024, 2:57 a.m.