test_diffexp: Test differential expression

In OliverDietrich/SeuratHelper: Helper functions to assist scRNA-seq data analysis from a Seurat object

Test differential expression

Description

This function performs differential expression analysis on a Seurat object

Usage

test_diffexp(
  object = NULL,
  groups = NULL,
  block = NULL,
  min.lfc = 0.25,
  assay = "RNA",
  slot = "data",
  dict = object@misc$features,
  from = 1,
  to = 2
)

Arguments

object	Seurat object
groups	Vector of group assignments
block	Factor of group assignments to block
min.lfc	Numeric scalar indicating the minimum difference in means to calculate a p.value
assay	Assay with expression data (e.g. RNA)
slot	Slot of expression data (counts, data, scale.data)

OliverDietrich/SeuratHelper documentation built on Jan. 20, 2024, 2:57 a.m.