OthoMantegazza/crossr: Functions For Cross Species Quantitative Transcriptomics
Version 0.0.0.9001

Functions that constitute a simple workflow for cross species transcriptomic comparison. The required input are expression matrix, we suggest to use TPM produced with a pseudoaligner, and orthogroups, we suggest orthofinder for orthogroups inference. The package implements a simple linear model based workflow in order to select genes that behave differently among species.

Getting started

Package details

Maintainer
LicenseGPL-3 | file LICENSE
Version0.0.0.9001
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("OthoMantegazza/crossr")
OthoMantegazza/crossr documentation built on Dec. 4, 2017, 5:29 a.m.