switch_ids: Utility for Converting Ids
In OthoMantegazza/crossr: Functions For Cross Species Quantitative Transcriptomics
switch_ids R Documentation
Utility for Converting Ids
Description
switch_ids is a small utility function that can be used to convert protein ID to transcript ID in an orthogroups
Usage
switch_ids(ogroups, ids_table, px_id, tx_id, mc.cores = 1)
Arguments
ogroups
a list of orthogroups
ids_table
a data.frame that matches the protein ID to transcript ID
px_id
a character string indicating the name of the column of protein ids in the annotation file
tx_id
a character string indicating the name of the column of transcript ids in the annotation file
mc.cores
numeric, the number of threads used for mclapply
OthoMantegazza/crossr documentation built on Feb. 1, 2023, 4:15 a.m.
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| switch_ids | R Documentation |
Utility for Converting Ids
Description
switch_ids is a small utility function that can be used to convert protein ID to transcript ID in an orthogroups
Usage
switch_ids(ogroups, ids_table, px_id, tx_id, mc.cores = 1)
Arguments
ogroups |
a |
ids_table |
a |
px_id |
a |
tx_id |
a |
mc.cores |
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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