parse_orthogroups | R Documentation |
parse_orthogroups
parses an orthogroup CSV file provided by Orthofinder and
outputs the result as a list of orthogroups
parse_orthogroups(path_2_ogroups)
path_2_ogroups |
a character string that provides the path to the orthogroup file |
Orthofinder outputs both and OrthologousGroup.txt file and OrthologousGroup.csv file, this function is designed to parse the OrthologousGroup.csv file
https://github.com/davidemms/OrthoFinder; Emms, D.M. and Kelly, S. (2015) OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biology 16:157
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