parse_orthogroups: Parse and Load an Orthogroup CSV File Provided by Orthofinder

View source: R/parsers.R

parse_orthogroupsR Documentation

Parse and Load an Orthogroup CSV File Provided by Orthofinder

Description

parse_orthogroups parses an orthogroup CSV file provided by Orthofinder and outputs the result as a list of orthogroups

Usage

parse_orthogroups(path_2_ogroups)

Arguments

path_2_ogroups

a character string that provides the path to the orthogroup file

Warning

Orthofinder outputs both and OrthologousGroup.txt file and OrthologousGroup.csv file, this function is designed to parse the OrthologousGroup.csv file

Note

https://github.com/davidemms/OrthoFinder; Emms, D.M. and Kelly, S. (2015) OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biology 16:157


OthoMantegazza/crossr documentation built on Feb. 1, 2023, 4:15 a.m.