Files in OthoMantegazza/crossr
Functions For Cross Species Quantitative Transcriptomics
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/linear_mod.R
R/parsers.R
R/plots.R
R/s4.R
R/wranglers.R
README.md
_Rbuildignore
_Rhistory
_gitignore
crossr.Rproj
data-raw/get_lyrata_reads.R
data-raw/prepare_data_s4_test.R
data-raw/reduce_big_dataframes.Rmd
data-raw/tst.txt
inst/exdata/SRP058527_metadata.txt
inst/exdata/lyrata/SRR2033954/quant.sf
inst/exdata/lyrata/SRR2033955/quant.sf
inst/exdata/lyrata/SRR2033956/quant.sf
inst/exdata/lyrata/SRR2033957/quant.sf
inst/exdata/lyrata/SRR2033958/quant.sf
inst/exdata/lyrata/SRR2033959/quant.sf
inst/exdata/lyrata_features_sample.txt
inst/exdata/ogroups_sample.csv
inst/exdata/quant.sf
inst/exdata/thaliana/SRR2033948/quant.sf
inst/exdata/thaliana/SRR2033949/quant.sf
inst/exdata/thaliana/SRR2033950/quant.sf
inst/exdata/thaliana/SRR2033951/quant.sf
inst/exdata/thaliana/SRR2033952/quant.sf
inst/exdata/thaliana/SRR2033953/quant.sf
inst/exdata/thaliana_features_sample.txt
man/add_fit.Rd
man/check_ogset.Rd
man/collapse_orthologs.Rd
man/explore_ogroups.Rd
man/get_TPM.Rd
man/get_df.Rd
man/get_gene_df.Rd
man/get_top_tags.Rd
man/ggplot_all_stages.Rd
man/ggplot_ogroup_genes.Rd
man/make_TPM_df.Rd
man/make_fit.Rd
man/ogset-class.Rd
man/parse_orthogroups.Rd
man/plot_all_stages.Rd
man/plot_og_genes.Rd
man/sum_groups.Rd
man/switch_ids.Rd
tests/testthat.R
tests/testthat/sample_100_OrthologousGroup.csv
tests/testthat/sample_expr_th.csv
tests/testthat/sample_oges.Rdata
tests/testthat/sample_oges.txt
tests/testthat/sample_quant.sf
tests/testthat/test-lm.R
tests/testthat/test-ogroup-parser.R
tests/testthat/test_ogroup_collapsing.R
tests/testthat/test_parsers.R
tests/testthat/test_s4_structure.R
tests/testthat/test_switch_ids.R
tests/testthat/tos4.Rdata
vignettes/quick_overview.Rmd
