plot_all_stages | R Documentation |
plot_all_stages
is a wrapper for stripchart
and plots a stripchart
and a line plot of the expression of an orthogroup across all samples
plot_all_stages(orthogroup, ogset, species, condition, main = "", use_annos = FALSE, annos_col = NULL, ...)
orthogroup |
a |
ogset |
an ogset class element |
species |
a string used to encode the species info in the design formula |
condition |
a string used to encode the experimental conditions of the samples in the columns of the dset |
main |
the title of the plot |
use_annos |
|
annos_col |
a |
... |
arguments to be passed to |
This function takes an orthogroup ID and an ogset class element as arguments. It plots a stripchart of the expression of all the stages; The title of the stripchart contains details on: how many genes are in the orthogroup, the cluster that contain the ogroup (if any), the F-value for the interaction term.
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