createFrequencyMat: Create frequency matrix
In PYangLab/PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data
createFrequencyMat R Documentation
Create frequency matrix
Description
Create frequency matrix
Usage
createFrequencyMat(substrates.seq)
Arguments
substrates.seq
A substrate sequence
Value
A frequency matrix of amino acid from substrates.seq.
Examples
data("phospho_L6_ratio_pe")
# We will create a frequency matrix of Tfg S198 phosphosite.
idx = which(grepl("TFG\\;S198\\;", rownames(phospho.L6.ratio.pe)))
substrate.seq = Sequence(phospho.L6.ratio.pe)[idx]
freq.mat = createFrequencyMat(substrate.seq)
PYangLab/PhosR documentation built on Nov. 1, 2024, 1:47 p.m.
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| createFrequencyMat | R Documentation |
Create frequency matrix
Description
Create frequency matrix
Usage
createFrequencyMat(substrates.seq)
Arguments
substrates.seq |
A substrate sequence |
Value
A frequency matrix of amino acid from substrates.seq.
Examples
data("phospho_L6_ratio_pe")
# We will create a frequency matrix of Tfg S198 phosphosite.
idx = which(grepl("TFG\\;S198\\;", rownames(phospho.L6.ratio.pe)))
substrate.seq = Sequence(phospho.L6.ratio.pe)[idx]
freq.mat = createFrequencyMat(substrate.seq)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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