plotKinaseNetwork: Plot kinase network
In PYangLab/PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data
View source: R/plotFunctions.R
plotKinaseNetwork R Documentation
Plot kinase network
Description
Plot kinase network
Usage
plotKinaseNetwork(KSR, predMatrix, threshold = 0.9, color,
type = NULL, verbose = FALSE)
Arguments
KSR
Kinase-substrate relationship scoring results
predMatrix
Output of kinaseSubstratePred function
threshold
Threshold used to select interconnected kinases for
the expanded signalomes
color
A string specifying the color vector for nodes
type
A type (graph or chord) of plot. If NULL, network
graph is plotted
verbose
Default to TRUE to show messages during the progress.
All messages will be suppressed if set to FALSE
Value
a graphical plot
PYangLab/PhosR documentation built on Nov. 1, 2024, 1:47 p.m.
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View source: R/plotFunctions.R
| plotKinaseNetwork | R Documentation |
Plot kinase network
Description
Plot kinase network
Usage
plotKinaseNetwork(KSR, predMatrix, threshold = 0.9, color,
type = NULL, verbose = FALSE)
Arguments
KSR |
Kinase-substrate relationship scoring results |
predMatrix |
Output of kinaseSubstratePred function |
threshold |
Threshold used to select interconnected kinases for the expanded signalomes |
color |
A string specifying the color vector for nodes |
type |
A type ( |
verbose |
Default to |
Value
a graphical plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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