DataLoader: download features for current featureset

Description Details Methods

Description

compare with featureset_id of the current measurementSet and update the feature stored in reference_object if there has been a change in featureset_id register new features (if any)

Details

return reference_object

For DEBUG only update feature and feature synonym in reference object assign feature ids

assume that new features have been registered by this time assign dataset_id and measurementset_id

Methods

Public methods


Method print_level()

Usage
DataLoader$print_level()

Method assign_biosample_ids()

Usage
DataLoader$assign_biosample_ids()

Method download_features_for_featureset()

Usage
DataLoader$download_features_for_featureset()

Method register_new_features()

Usage
DataLoader$register_new_features()

Method retrieve_features()

Usage
DataLoader$retrieve_features()

Method retrieve_feature_synonyms()

Usage
DataLoader$retrieve_feature_synonyms()

Method update_reference_object()

Usage
DataLoader$update_reference_object()

Method assign_feature_ids()

Usage
DataLoader$assign_feature_ids()

Method assign_other_ids()

Usage
DataLoader$assign_other_ids()

Method load_data()

Usage
DataLoader$load_data()

Method returnReferenceObject()

Usage
DataLoader$returnReferenceObject()

Method new()

Usage
DataLoader$new(data_df, reference_object, feature_annotation_df = NULL)

Method clone()

The objects of this class are cloneable with this method.

Usage
DataLoader$clone(deep = FALSE)
Arguments
deep

Whether to make a deep clone.


Paradigm4/insight documentation built on April 5, 2020, 1:12 p.m.