Files in Paradigm4/insight
SciDB REVEAL/Genomics API

.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS-api-dev.md R/admin-api.R R/api2_load-api.R R/api2_load-helper.R R/api2_template-helper.R R/api_choices.R R/api_dataframe_loader.R R/api_dataframe_reader.R R/api_excel_loader.R R/cache.R R/delete.R R/entity-schema.R R/feature-synonym.R R/functions-measurement-upload.R R/functions-register.R R/functions.R R/get-metadata.R R/helper-functions.R R/init.R R/json-helper.R R/measurement-statistics.R R/measurements.R R/package.R R/scidb-helper-functions.R R/search.R R/tests-register.R R/versioning.R README.md
data/SCHEMA.yaml
inst/extdata/gene__gencode_grch38_v24__newGene.tsv.gz
inst/extdata/gene__grch38_release85_homosap_gene__newGene.tsv.gz
inst/extdata/gene__grch38_release85_homosap_gene__newTranscript.tsv.gz
inst/extdata/gene__hugo__hgnc_complete_set.txt.gz
inst/extdata/rnaseq.txt
inst/extdata/scidb_metadata_template.xlsx
inst/extdata/travis-manual-tests.R man/Choices.Rd man/DataLoader.Rd man/DataLoaderVariantFormatA.Rd man/DataLoaderVariantGemini.Rd man/DataReaderVariantFormatA.Rd man/FeaturesetChoices.Rd man/FilterChoices.Rd man/PipelineChoices.Rd man/add_user_to_data_loaders.Rd man/aggr_proj_study_by_pheno.Rd man/api_register_biosamples.Rd man/api_register_definitions.Rd man/api_register_featuresets_experimentsets_measurementsets.Rd man/api_register_individuals.Rd man/api_register_ontology_from_definition_sheet.Rd man/as.scidb_int64_cols.Rd man/autoconvert_char.Rd man/build_reference_gene_set.Rd man/calculate_statistics_across_measurementsets.Rd man/calculate_statistics_rnaquantification.Rd man/calculate_statistics_variant.Rd man/custom_scan.Rd man/dao_search_expression.Rd man/feature_matching_level1.Rd man/filter_on_dataset_id_and_version.Rd man/find_matches_and_return_indices.Rd man/find_matching_featureset.Rd man/formulate_versioned_selection_query.Rd man/full_arrayname.Rd man/get_entity_from_cache.Rd man/get_entity_infoArrayExists.Rd man/get_experiments.Rd man/get_individuals.Rd man/get_logged_in_user.Rd man/get_mandatory_fields_for_register_entity.Rd man/get_measurements.Rd man/grant_initial_access.Rd man/init_db.Rd man/is_entity_cached.Rd man/join_info.Rd man/join_info_unpivot.Rd man/list_datasets.Rd man/list_ncol_in_aux_column.Rd man/list_nrow_in_aux_column.Rd man/list_users.Rd man/load_helper_column_rename.Rd man/load_helper_do_entity_specific_work.Rd man/load_helper_handle_duplicates.Rd man/load_helper_prepare_dataframe.Rd man/load_helper_replace_local_ids.Rd man/mandatory_fields.Rd man/match_features.Rd man/merge_aux_info_from_df.Rd man/merge_aux_info_from_file.Rd man/myExcelLoader.Rd man/myExcelReader.Rd man/populate_measurements.Rd man/prep_df_fields.Rd man/pretty_print.Rd man/register_entities_excel.Rd man/register_entities_workbook.Rd man/register_expression_dataframe.Rd man/register_expression_matrix.Rd man/register_expression_matrix_client.Rd man/register_gene_symbol.Rd man/register_genelist.Rd man/register_genelist_gene.Rd man/register_mandatory_and_flex_fields.Rd man/remove_old_versions_for_entity.Rd man/remove_versions.Rd man/revealgenomics.Rd man/run_tests_dataframe.Rd man/search_expression.Rd man/search_feature_by_synonym.Rd man/search_fusion.Rd man/search_individuals.Rd man/search_rnaquantification.Rd man/search_variants.Rd man/search_variants_scidb.Rd man/search_versioned_secure_metadata_entity.Rd man/select_from_1d_entity.Rd man/set_permissions.Rd man/show_dataset_permissions.Rd man/show_user_permissions.Rd man/template_helper_convert_names.Rd man/template_helper_enforce_columns_defined.Rd man/template_helper_enforce_mandatory_columns_present.Rd man/template_helper_extract_definitions.Rd man/template_helper_extract_pipeline_meta_info.Rd man/template_helper_extract_record_related_rows.Rd man/template_helper_suffix_by_entity.Rd man/template_linker.Rd tests/testthat.R tests/testthat/test-caching.R tests/testthat/test-excel-loader-samples.R tests/testthat/test-excel_loader.R tests/testthat/test-features.R tests/testthat/test-helper-functions.R tests/testthat/test-register.R tests/testthat/test-schema.R tests_custom/admin-api-tests.R tests_custom/api_choices_object_tests.R tests_custom/api_dataframe_tests.R tests_custom/emmett/test_delete_project.R tests_custom/test-genelist.R vignettes/README.md vignettes/setup.Rmd
Paradigm4/insight documentation built on Sept. 8, 2018, 3:38 a.m.