search_expression_by_one_measurementset_zero_or_more_features: Subpath for 'search_expression'

In Paradigm4/insight: SciDB REVEAL/Genomics API

Description

Faster implementation of search_expression for one measurementset (Pipeline), and multiple features. Here, there is no option to select by specific biosamples

Usage

search_expression_by_one_measurementset_zero_or_more_features(
  entity,
  measurementset,
  biosample_ref,
  feature = NULL,
  formExpressionSet = TRUE,
  featureNameAsFeatureIdentifier,
  con = NULL
)

Arguments

biosample_ref	Reference dataframe containing at least the biosample data for current study (e.g. by calling search_biosamples(dataset_id = measurementset$dataset_id)). OK if more biosample rows are provided (e.g. by calling get_biosamples())
featureNameAsFeatureIdentifier	if TRUE, use FEATURE.name as row identifier (if FALSE, use gene symbol)

Paradigm4/insight documentation built on April 5, 2020, 1:12 p.m.