Description Super classes Methods
generic variant loader that aims to work with multiple formats
makes sure the mandatory fields for registering variants are named accordingly
for biosample matching, preps a column called biosample_name
for feature matching
creates a column called scidb_feature_column
stores annotation information in feature_annotation_df
slot
(column name of this data.frame describes whether feature name
or gene_symbol
should be used for matching)
generic variant loader that aims to work with multiple formats
makes sure the mandatory fields for registering variants are named accordingly
for biosample matching, preps a column called biosample_name
for feature matching
creates a column called scidb_feature_column
stores annotation information in feature_annotation_df
slot
(column name of this data.frame describes whether feature name
or gene_symbol
should be used for matching)
revealgenomics::DataReader
-> revealgenomics::DataReaderVariant
-> DataReaderVariantFormatA
print_level()
DataReaderVariantFormatA$print_level()
load_data_from_file()
DataReaderVariantFormatA$load_data_from_file()
clone()
The objects of this class are cloneable with this method.
DataReaderVariantFormatA$clone(deep = FALSE)
deep
Whether to make a deep clone.
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