Description Usage Arguments Details Examples
View source: R/measurement-statistics.R
Aggregate project, study info by phenotype column(s)
1 | aggr_proj_study_by_pheno(filter_column, method = 1, con = NULL)
|
filter_column |
one or more filte rcolumns to aggregate by |
Aggregate project and study information by selected phenotype columns
For example, disease
is phenotype related information that is retained under the
BIOSAMPLE
entity. If we specify filter_column = 'primary_disease'
, then
the function aggregates counts by disease by study. Function also joins in
project id and name
1 2 3 4 5 | aggr_proj_study_by_pheno(filter_column = c('sample_cell_type', 'sample_molecule_type'))
returns
study_id study_version project_id project_name study_name filter_column filter_value total
528 237 1 1 MMRF CoMMpass MMRF CoMMpass IA13a primary_disease multiple myeloma 2035
529 238 1 1 MMRF CoMMpass MMRF CoMMpass IA14a primary_disease multiple myeloma 2072
|
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