lean_esetSpectralMap: plot spectral map biplot of an eSet object

In Paradigm4/insight: SciDB REVEAL/Genomics API

Description

This function is a modified version of function esetSpectralMap(). This function plots the biplot of the specified dimensions of an input mpm object (mpm object contains the singular value decomposition / PCA of a matrix).

Usage

lean_esetSpectralMap(
  color,
  topSamples,
  topGenes,
  cloudGenes,
  mpm_result,
  esetUsed,
  colorVar,
  psids,
  mpm.args,
  symmetryAxes,
  packageTextLabel,
  packageInteractivity,
  topGenesVar,
  cloudGenesIncludeLegend,
  cloudGenesColor,
  title,
  dim,
  returnAnalysis,
  typePlot = c("static", "interactive")
)

Details

lean_esetSpectralMap

Paradigm4/insight documentation built on April 5, 2020, 1:12 p.m.