correct_data_channels: Normalize data

In ParkerICI/premessa: R package for pre-processing of flow and mass cytometry data

Normalize data

Description

This function performs the actual normalization

Usage

correct_data_channels(
  m,
  beads.data,
  baseline,
  beads.col.names,
  time.col.name = "Time"
)

Arguments

m	The data matrix
beads.data	The beads.data for this data matrix. This would typically be a subset of the rows representing the bead events
baseline	A vector of values containing the bead channels values to be used as baseline for normalization
beads.col.names	A vector with the names of the beads channels
time.col.name	The name of the time column

Value

Returns a list with the following components

• m.normed The normalized data matrix

• beads.smoothed A matrix containing the smoothed beads data

• beads.normed A matrix containing the normalized beads data

• beads.slopes A matrix containing the calculated beadlsopes with nrow(beads.slopes) = nrow(beads.data) and two columns: time and slope

ParkerICI/premessa documentation built on Sept. 16, 2022, 3:06 p.m.