debarcode_data: Debarcodes data by doing normalization after preliminary...

In ParkerICI/premessa: R package for pre-processing of flow and mass cytometry data

Debarcodes data by doing normalization after preliminary barcode assignemnts

Description

Debarcodes data by doing normalization after preliminary barcode assignemnts

Usage

debarcode_data(m, bc.key, downsample.to = NULL)

Arguments

m	The data matrix
bc.key	The barcode key, as returned by read_barcode_key

Value

Returns a list with the following components

• m.normed matrix with nrow(m) rows. The normalized barcode intensities

• labels character vector of length nrow(m). The sample assignments

• deltas numeric vector of length nrow(m). For each event, the separation between the lowest barcode channel and the highest non-barcode channel

• bc.channels character vector. The name of the barcode channels

ParkerICI/premessa documentation built on Sept. 16, 2022, 3:06 p.m.