get_well_abundances: Calculate number of events assigned to each sample

In ParkerICI/premessa: R package for pre-processing of flow and mass cytometry data

Calculate number of events assigned to each sample

Description

Calculate number of events assigned to each sample

Usage

get_well_abundances(
  bc.results,
  sep.thresholds,
  mahal.threshold = NULL,
  mahal.dist = NULL
)

Arguments

bc.results	The debarcoding results returned from debarcode_data
mahal.threshold	If not NULL The threshold value for the Mahalanobis distance between each event and the centroid of the sample the event has been assigned to. Only events with distance lower than this threshold are assigned to the sample.
mahal.dist	A vector of Mahalnobis distances, as returned by get_mahalanobis_distance. Only used if mahal.threshold is not NULL

ParkerICI/premessa documentation built on Sept. 16, 2022, 3:06 p.m.