rename_parameters_in_files: Renames FCS parameters in a set of files

In ParkerICI/premessa: R package for pre-processing of flow and mass cytometry data

Renames FCS parameters in a set of files

Description

This function renames FCS parameters in a set of files, as specified by a template

Usage

rename_parameters_in_files(working.dir, out.dir, tab)

Arguments

working.dir	The directory in which the files are located
out.dir	The output directory. This will be created as a subfolder of working.dir
tab	The table specifying how the renaming should be performed. This is a structure similar as the data.frame returned from read_parameters. row.names correspond to the current parameter names in the files, and columns correspond to files (which should be located in the working.dir). The value at [row, column] should contain the value you want to set for the corresponding parameter description (i.e. $PnS). In addition the data.frame must contain two extra columns with the following names Remove logical indicating whether the parameter should be removed from the files Parameter character indicating the desired new name of the parameter (i.e. the new $PnN)

ParkerICI/premessa documentation built on Sept. 16, 2022, 3:06 p.m.