vstUMI4C: Variance stabilizing transformation
In Pasquali-lab/UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
View source: R/callInteractions.R
vstUMI4C R Documentation
Variance stabilizing transformation
Description
Using a DDS object performs a variance stabilizing transformation from DESeq2
package to the UMI4C counts
Usage
vstUMI4C(dds)
Arguments
dds
DDS object generated by UMI4C2dds
Details
This function estimate the size factors and dispersions of the counts
base on DESeq for infering the VST distribution and
transform raw UMI4C counts.
Value
DDS object with variance stabilizing transformation counts
Pasquali-lab/UMI4Cats documentation built on March 23, 2024, 9:42 p.m.
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View source: R/callInteractions.R
| vstUMI4C | R Documentation |
Variance stabilizing transformation
Description
Using a DDS object performs a variance stabilizing transformation from DESeq2 package to the UMI4C counts
Usage
vstUMI4C(dds)
Arguments
dds |
DDS object generated by |
Details
This function estimate the size factors and dispersions of the counts
base on DESeq for infering the VST distribution and
transform raw UMI4C counts.
Value
DDS object with variance stabilizing transformation counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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