| build_design_matrix | Creates an fmri design matrix, including timing files for for... |
| check_nmap_self_report_completion | Check NMAP Self Report Completion |
| check_singularity | Probe singular fits of random effects in mixed effects... |
| cleanup_regressor | Small utility function to handle any NAs in the regressor... |
| concat_design_runs | Concatenate design matrices for each run to form a single... |
| convolve_cpp | Internal function to convolve two vectors using nested for... |
| convolve_dcv_hrf | This function takes in a matrix of generated neural events... |
| convolve_double_gamma | This function convolves a stimulus vector with the... |
| convolve_fft_cpp | Internal function to convolve two vectors using FFT |
| convolve_regressor | This function convolves a regressor with a normalized HRF... |
| cor_heatmap | Function to generate ggplot correlation heatmap |
| cor_with_target | This function correlates a set of target variables (target)... |
| deconvolve_nlreg | C++ port of Bush and Cisler 2013, Magnetic Resonance Imaging... |
| deconvolve_nlreg_r | R port of Bush and Cisler 2013, Magnetic Resonance Imaging... |
| deconvolve_nlreg_resample | This function deconvolves the BOLD signal using Bush 2011... |
| dependlab-package | Useful functions for the UNC Chapel Hill DEPENd Lab... |
| detrendts | Detrend a time series up to quadratic trend. Used by... |
| dsigmoid | Dsigmoid transform |
| example_events | example events structure for build_design_matrix |
| example_nuisrun1 | example nuisance regressors for run1 used in... |
| example_nuisrun2 | example nuisance regressors for run2 used in... |
| example_signals | example signals structure for build_design_matrix |
| fir1Bandpass | Apply a FIR-1 bandpass filter a signal. Can low- or high-pass... |
| flex_vif | Render Variance Inflation Factor (VIF) in flextable |
| fmri.stimulus | Convolve a regressor with a hemodynamic response function for... |
| generate_feature | This function creates K shifts of a neural events vector... |
| generate_feature_armadillo | This function creates K shifts of a neural events vector... |
| generate_fsf_contrast_syntax | This function generates syntax for FSL Feat .fsf files for... |
| generate_fsf_ev_syntax | This function generates syntax for FSL Feat .fsf files for... |
| generate_fsf_lvl1_ev_syntax | This function generates syntax for FSL Feat .fsf files for... |
| generate_spm_contrasts | This function reads an SPM.mat file and generate contrasts... |
| generate_spm_mat | Uses an object from build_design_matrix to generate a... |
| get_scid_dx | Fetch and Process SCID Survey Data |
| gmcmapply | expand.grid-based multi-core multivariate apply (mcmapply)... |
| import_neuromap_self_reports | Imports NeuroMAP Self Report Data from Qualtrics |
| import_score_neuromap_self_reports | Import and Score NeuroMAP Self Report Data |
| import_score_neuromap_sidp | Import and Score NeuroMAP SIDP Survey Data |
| initialize_project | create a new data analysis project |
| initialize_study | initialize a study-level directory structure |
| installMissingPkgs | Installs packages that are missing based off a list provided.... |
| lmer_predict | This function predicts outcome variable from a (g)lmer object... |
| match_subIDs_names | Add subject IDs to data which only contain subject's names by... |
| mean_impute_items | Function to impute the mean for missing items on a per-case... |
| place_dmat_on_time_grid | Function to convert dmat (runs x regressor list) to a... |
| qsub_file | This function submits a single script using the qsub command.... |
| rat.brain | rat.brain data in Chapter 5 of West, Welch, and Galecki... |
| read_neuromap_demg | read and clean demographic data from Qualtrics |
| render_flex_aictab | Render a pretty AIC comparison table in flextable for... |
| retrieve_onedrive | retrieve .csv and excel (xls/xlsx) files from... |
| runAFNICommand | Wrapper for running an AFNI command safely within R |
| runFSLCommand | Wrapper for running an fsl command safely within R |
| runmean | compute a moving average smooth over a time series (here, a... |
| score_asws | Score the Adolescent Sleep Wake Scale (ASWS) |
| score_bfi | Score The Big Five Inventory-2 - 60 items BFI-2 (Soto & John,... |
| score_bpq | Score the Borderline Personality Questionnaire (BPQ) |
| score_ctq | Score the Childhood Trauma Questionnaire - CTQ scale... |
| score_cts | Score the Conflict Tactics Scale (CTS) |
| score_das | Scores the Dyadic Adjustment Scale (Spanier 1976) This is for... |
| score_ders | Score the Difficulties in Emotion Regulation Scale (DERS)... |
| score_dusi | Score the Short Version of the Revised Drug Use Screening... |
| score_ecr | Score the experiences in close relationships - revised... |
| score_emotb | Score Adult EMOTB |
| score_fs | Score the Flourishing Scale (Diener, Wirtz, Tov, Kim-Prieto,... |
| score_iip90 | Score the Inventory for Interpersonal Problems - 90 items PD... |
| score_isc | Score the Interpersonal Stressors Circumplex (ISC) |
| score_lsas | Score the Liebowitz Social Anxiety Scale (LSAS) |
| score_neo | Score the NEO Five-Factor Inventory (NEO-FFI) scale (Costa &... |
| score_paibor | Score PAI-BOR subscales for affective instability, indentity... |
| score_panas | Score the Positive and Negative Affect Schedule (PANAS) scale |
| score_pid5 | Score the Personality Inventory for DSM-5 Faceted Brief Form... |
| score_rist | Calculate RIST T-scores, RIST index, percentile and 90... |
| score_rse | Score the Relationship and Sex Education (RSE) scale |
| score_rt | Score the Risk Taking - 18 item scale (RT-18) |
| score_sbpni | Score the 12-item Super-Brief Pathological Narcissism... |
| score_swls | Score the Satisfaction with Life Scale (Diener, Emmons,... |
| score_upps | Score the UPPS-P Impulsive Behavior scale - revised 59 item... |
| sidp_report | Generate a Detailed Report for a Specific Subject from SIDP... |
| sigmoid | Sigmoid transform |
| spm_extract_anatomical_rois | This is a wrapper around the spm_extract_anatomical_rois.m... |
| spm_hrf | R port of spm8 functions needed for deconvolution spm_hrf -... |
| visualize_design_matrix | Visualize design matrix, including event onset times and run... |
| wait_for_job | This function pauses execution of an R script while a... |
| wgr_deconv_canonhrf_par | R port of Wu et al. 2013, Medical Image Analysis Adapted from... |
