Files in PennStateDEPENdLab/experiment_pipeline
Generates data markdown for NeuroMap Task
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/acq2hdf5.R
R/acq2txt.R
R/control-cluster.R
R/correct_peaks.R
R/downsample_digital_timeseries_r.R
R/ecg_detect_beats.R
R/ecg_qa.R
R/edf2asc.R
R/ep.eye_cleanup.R
R/ep.eye_cleanup_helpers.R
R/ep.eye_display_steps.R
R/ep.eye_initialize.R
R/ep.eye_initialize_helpers.R
R/ep.eye_msg_report.R
R/ep.eye_parse_events.R
R/ep.eye_parse_events_helpers.R
R/ep.eye_preprocess_gaze.R
R/ep.eye_preprocess_helpers.R
R/ep.eye_preprocess_pupil.R
R/ep.eye_process_dir.R
R/ep.eye_process_subject.R
R/ep.eye_qa.R
R/ep.eye_setup_proc_config.R
R/ep.eye_setup_proc_config_helpers.R
R/experiment.pipeline-package.R
R/import-data.R
R/import_subject.R
R/init_log.R
R/logger.R
R/nmap-block.R
R/nmap-logger.R
R/nmap-verify.R
R/physio_functions.R
R/read-config.R
R/read_behav.R
R/read_physio.R
R/validate_exp_yaml.R
README.md
TODO.md
config.yml
experiment.pipeline.Rproj
inst/examples/Neighborhood_extracted_ex.R
inst/examples/dtk/070_dtk_behav.csv
inst/examples/dtk/070_dtk_behav.log
inst/examples/dtk/070_dtk_behav.psydat
inst/examples/dtk/070_dtk_eye.edf
inst/examples/neighborhood/070_neighborhood_behav.csv
inst/examples/neighborhood/070_neighborhood_behav.log
inst/examples/neighborhood/070_neighborhood_behav.psydat
inst/examples/neighborhood/070_neighborhood_eye.edf
inst/examples/neighborhood/edf2asc.log
inst/examples/neighborhood/eye_msg_csvs/070_eye_msgs.csv
inst/examples/neuromap_ttl_codes.csv
inst/examples/neuromap_ttl_codes_unc.csv
inst/examples/shrooms/070_shrooms_behav.mat
inst/examples/shrooms/070_shrooms_eye.edf
inst/examples/vanilla/070_vanilla_behav.csv
inst/examples/vanilla/070_vanilla_behav.log
inst/examples/vanilla/070_vanilla_behav.psydat
inst/examples/vanilla/070_vanilla_eye.edf
inst/examples/vending/070_Instrumental_2020_Feb_18_1412.csv
inst/examples/vending/070_Instrumental_2020_Feb_18_1412.log
inst/examples/vending/070_Pavlovian_2020_Feb_18_1421.csv
inst/examples/vending/070_Pavlovian_2020_Feb_18_1421.log
inst/examples/vending/070_transfer_2020_Feb_18_1438.csv
inst/examples/vending/070_transfer_2020_Feb_18_1438.log
inst/examples/vending/070_vending_ins_eye.edf
inst/examples/vending/070_vending_pav_eye.edf
inst/examples/vending/070_vending_trans_eye.edf
inst/examples/yaml_config/neighborhood.yaml
inst/examples/yaml_config/shrooms.yaml
inst/extdata/ep_configs/Neighborhood/Neighborhood.yaml
inst/extdata/ep_configs/Neighborhood/Neighborhood_extract_ev.R
inst/extdata/ep_configs/SortingMushrooms/SortingMushrooms.yaml
inst/extdata/ep_configs/SortingMushrooms/SortingMushrooms_extract_ev.R
inst/extdata/ep_preproc/SortingMushrooms/elog/005_EK.elog
inst/extdata/ep_preproc/SortingMushrooms/eye_event_csvs/005_EK.csv
inst/extdata/raw_data/SortingMushrooms/Eye/005_EK_SortingMushrooms_Eye.edf
inst/extdata/raw_data/SortingMushrooms/Eye/010_AE_SortingMushrooms_Eye.edf
inst/extdata/raw_data/SortingMushrooms/Eye/013_KV_SortingMushrooms_Eye.edf
man/Block-class.Rd
man/acq2hdf5.Rd
man/acq2txt.Rd
man/augment_ttl_details.Rd
man/biopac_hdf5_to_dataframe.Rd
man/block.validity.Rd
man/boxcar_smooth.Rd
man/connect.blocks.Rd
man/correct_peaks.Rd
man/create.block.Rd
man/create.log.Rd
man/downsample_digital_timeseries.Rd
man/downsample_digital_timeseries_r.Rd
man/downsample_physio.Rd
man/ecg_detect_beats.Rd
man/ecg_stripplot.Rd
man/edf2asc.Rd
man/ep.eye_add_aois.Rd
man/ep.eye_build_msg_seq.Rd
man/ep.eye_check_msg_order.Rd
man/ep.eye_check_requested_msg.Rd
man/ep.eye_cleanup.Rd
man/ep.eye_collapse_time.Rd
man/ep.eye_default_options.Rd
man/ep.eye_display_steps.Rd
man/ep.eye_downsample.Rd
man/ep.eye_gen_aoi_look.Rd
man/ep.eye_gen_aoi_ref.Rd
man/ep.eye_get_session_length.Rd
man/ep.eye_inherit_btw_ev.Rd
man/ep.eye_initialize.Rd
man/ep.eye_interp_pupil.Rd
man/ep.eye_meta_check.Rd
man/ep.eye_msg_report.Rd
man/ep.eye_parse_event_info.Rd
man/ep.eye_parse_events.Rd
man/ep.eye_preprocess_gaze.Rd
man/ep.eye_preprocess_pupil.Rd
man/ep.eye_process_subject.Rd
man/ep.eye_raw_sample_continuity_check.Rd
man/ep.eye_rm_crinfo.Rd
man/ep.eye_rm_impossible.Rd
man/ep.eye_setup_proc_config.Rd
man/ep.eye_setup_structure.Rd
man/ep.eye_shift_timing.Rd
man/ep.eye_store_between_event_messages.Rd
man/ep.eye_tag_event_time.Rd
man/ep.eye_unify_gaze_events.Rd
man/ep.eye_unify_raw_msg.Rd
man/ep.eye_validate_msg_seq.Rd
man/experiment.pipeline.Rd
man/find.unprocessed.Rd
man/get.block.name.Rd
man/get.callback.Rd
man/get.input.blocks.Rd
man/get.output.blocks.Rd
man/get.system.Rd
man/ibi_qa.Rd
man/import.all.Rd
man/import.dtk.Rd
man/import.mat.Rd
man/import.neighborhood.Rd
man/import.shrooms.Rd
man/import.yaml.Rd
man/import_subject.Rd
man/import_wfdb_annotations.Rd
man/init.clusters.Rd
man/init_eyelog.Rd
man/log.debug.Rd
man/log.error.Rd
man/log.info.Rd
man/log.warn.Rd
man/log_chunk_header.Rd
man/read_acq.Rd
man/read_acq_txt.Rd
man/read_behav.Rd
man/read_behav_vending.Rd
man/read_edf.Rd
man/read_physio.Rd
man/read_physio_neighborhood.Rd
man/run.block.Rd
man/set.block.name.Rd
man/set.callback.Rd
man/set.input.block.Rd
man/set.output.blocks.Rd
man/shift_peaks.Rd
man/splice_physio.Rd
man/terminate.clusters.Rd
man/tryCatch.ep.Rd
man/validate_exp_yaml.Rd
renv/.gitignore
renv/activate.R
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/downsample_digital_timeseries.cpp
vignettes/ep.eye_config.Rmd
vignettes/ev_extract.Rmd
