plotEFDR: Plots an object of class 'EFDR'.

In PeteHaitch/RUVcorr: Removal of unwanted variation for gene-gene correlations and related analysis.

Description

plot.EFDR plots the EDFR curves stored in the objects of class EDFR.

Usage

plotEFDR(x, main, legend, ...)

Arguments

x	An object of class EFDR or a list of objects of class EFDR.
main	A character string describing the title of the plot.
legend	A vector of character strings decribing the different EDFR objects in x; only applicable when x is a list.
...	Further arguments passed to or from other methods.

Value

plot.EDFR returns a plot.

Author(s)

Saskia Freytag

Examples

Y<-simulateGEdata(500, 500, 10, 2, 5, g=NULL, Sigma.eps=0.1, 250, 100, check.input=FALSE)
anno<-as.matrix(sample(1:4, dim(Y$Y)[1], replace=TRUE))
colnames(anno)<-"Factor"
weights<-findWeights(Y$Y, anno, "Factor")
efdr<-calculateEFDR(Y$Y, exclude=1:100, index.ref=1:10, Weights=weights, anno=anno, Factor="Factor")
plotEFDR(efdr)

PeteHaitch/RUVcorr documentation built on May 8, 2019, 1:31 a.m.