Files in PlantDefenseMetabolism/MetCirc

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data

R/NDP.R R/allocatePrecursor2mz.R R/binnedMSP-data.R R/binning.R R/convert2MSP.R R/convertExampleDF-data.R R/convertMSP2MSP-data.R R/convertMSP2MSP.R R/idMSMStissueproject-data.R R/idMSMStoMSP-data.R R/linkMatrix.R R/plottingFunctions.R R/sd01_outputXCMS-data.R R/sd02_deconvoluted-data.R R/shinyApp.R R/similarityMat-data.R Readme.md inst/unitTests/test_NDP.R inst/unitTests/test_allocatePrecursor2mz.R inst/unitTests/test_binning.R inst/unitTests/test_convert2MSP.R inst/unitTests/test_convertMSP2MSP.R inst/unitTests/test_linkMatrix.R inst/unitTests/test_plottingFunctions.R inst/unitTests/test_shinyApp.R man/MSP.Rd man/NDP.Rd man/adduct-set.Rd man/adduct.Rd man/allocatePrecursor2mz.Rd man/binnedMSP.Rd man/binning.Rd man/cart2Polar.Rd man/circosLegend.Rd man/classes-set.Rd man/classes.Rd man/combine.Rd man/compartmentTissue.Rd man/convert2MSP.Rd man/convertExampleDF.Rd man/convertMSP2MSP.Rd man/createLink0Matrix.Rd man/createLinkMatrix.Rd man/createOrderedSimMat.Rd man/createSimilarityMatrix.Rd man/cutLinkMatrix.Rd man/cutUniquePrecursor.Rd man/extract-methods.Rd man/getBegEndIndMSP.Rd man/getLinkMatrixIndices.Rd man/getPrecursorMZ.Rd man/getRT.Rd man/highlight.Rd man/idMSMStoMSP-data.Rd man/information-set.Rd man/information.Rd man/length-method.Rd man/minFragCart2Polar.Rd man/msp2FunctionalLossesMSP.Rd man/msp2msp.Rd man/names-set.Rd man/names.Rd man/peaks.Rd man/plotCircos.Rd man/printInformationSelect.Rd man/sd01_outputXCMS.Rd man/sd02_deconvoluted.Rd man/shinyCircos.Rd man/show-method.Rd man/similarityMat.Rd man/thresholdLinkMatrix.Rd man/tissue.Rd man/truncateName.Rd tests/runTests.R