Description Usage Arguments Details Value Author(s) Examples
Internal function for shiny application. May also be used outside of shiny to reconstruct figures.
createOrderedSimMat(similarityMatrix, order = c("retentionTime", "mz", "clustering"))
createOrderSimMat takes a similarity matrix and a
as arguments. It will then reorder rows and columns of
the similarityMatrix object such, that it orders rows and columns of
similarityMatrix according to m/z, retention time or clustering in
createOrderSimMat is employed in the shinyCircos
function to create
similarityMatrix objects which will allow to switch
between different types of ordering in between groups (sectors) in the
circos plot. It may be used as well externally, to reproduce plots outside
of the reactive environment (see vignette for a workflow).
createOrderedSimMat returns a similarity matrix with ordered
rownames according to the
character vector given to order
Thomas Naake, email@example.com
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data("binnedMSP", package = "MetCirc") data("similarityMat", package = "MetCirc") ## order according to retention time createOrderedSimMat(similarityMatrix = similarityMat, order = "retentionTime")
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