Description Usage Arguments Details Value Author(s) Examples
Visualise the similarity of MS/MS features in a reactive
Details the vignette for further descriptions on how to use
shinyCircos(similarityMatrix, msp = NULL, ...)
further arguments passed to
The function is based on the
The user can choose interactively thresholds, type of links (between or
within groups), display information about MS/MS features, permanently select
MS/MS features and export selected precursors. When running
shinyCircos with the object of class
MSP, annotation data of
selected MS/MS features will be displayed.
shinyCircos returns a
character vector with the
(permanently) selected precursors or an object with the entries
selectedFeatures if a
MSP-object was passed to
Thomas Naake, email@example.com
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data("idMSMStoMSP", package = "MetCirc") ## truncate files finalMSP <- finalMSP[c(1:20, 29:48, 113:132, 240:259)] data("binnedMSP", package = "MetCirc") binnedMSP <- binnedMSP[c(1:20, 29:48, 113:132, 240:259),] similarityMat <- createSimilarityMatrix(binnedMSP) ## Not run: shinyCircos(similarityMatrix = similarityMat, msp = finalMSP)
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