Description Usage Arguments Details Value Author(s) Examples
Create a cut link matrix
cutLinkMatrix(LinkMatrix, type = c("all", "inter", "intra"))
This function is used to cut features from LinkMatrix. If type = "all", LinkMatrix will not be changed; if type = "inter" the cut LinkMatrix will only contain entries of links which are between groups and not inside groups; contrary to that, if type = "intra" the cut LinkMatrix will only contain entries of links which are inside groups and not between groups.
cutLinkMatrix returns a matrix that gives per each row information on linked features
Thomas Naake, firstname.lastname@example.org
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data("binnedMSP", package = "MetCirc") ## use only a selection binnedMSP <- binnedMSP[c(c(1:20, 29:48, 113:132, 240:259)),] similarityMat <- createSimilarityMatrix(binnedMSP) linkMat <- createLinkMatrix(similarityMatrix = similarityMat, threshold_low = 0.75, threshold_high = 1) cutLinkMatrix(LinkMatrix = linkMat, type = "all")
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