longCorreloMultiple: Plots the correlogram given the multiple taxa indices.

In PratheepaJ/bootLong: The Block Bootstrap Method for Longitudinal Count Data

Description

Plots the correlogram given the multiple taxa indices.

Usage

longCorreloMultiple(pstr, main_factor, time_var, starttaxa = 1,
  endtaxa = 4, taxlevel = "Species")

Arguments

pstr	(Required). A phyloseq-class. The arcsinh transformation of the otu table.
main_factor	Character string. The name of the variable to map main factor in the plot (factor vector).
time_var	Character string. The name of the variable to map time in the plot (integer vector).
starttaxa	Numeric. The first index of taxa ordered by total reads
endtaxa	Numeric. The last index of taxa ordered by total reads
taxlevel	Character string. The taxonomy level for the plot title

Value

ggplot2 object of correlogram for multiple taxa.

PratheepaJ/bootLong documentation built on April 5, 2020, 2:19 p.m.