longVarioMultiple: Plots the variogram for multiple taxa given the indices.

In PratheepaJ/bootLong: The Block Bootstrap Method for Longitudinal Count Data

Description

Plots the variogram for multiple taxa given the indices.

Usage

longVarioMultiple(pstr, main_factor, time_var, subjectID_var,
  starttaxa = 1, endtaxa = 4, point = FALSE, taxlevel = "Species")

Arguments

pstr	(Required). A phyloseq-class. The arcsinh transformation of the otu table.
main_factor	Character string. The name of the variable to map main factor in the plot (factor vector).
time_var	Character string. The name of the variable to map time in the plot (integer vector).
subjectID_var	Character string. The name of the variable to map Subject Ids in the plot (factor vector).
starttaxa	Numeric. The first index of taxa ordered by total reads
endtaxa	Numeric. The last index of taxa ordered by total reads
point	Logical. Whether variogram with observed values.
taxlevel	Character string. The taxonomy level for the plot title

Value

ggplot object of variogram for for multiple taxa.

PratheepaJ/bootLong documentation built on April 5, 2020, 2:19 p.m.