longPACFSingle: Plot PACF for each taxon.

In PratheepaJ/bootLong: The Block Bootstrap Method for Longitudinal Count Data

Description

Plots the PACF (Partial Autocorrelation Function) given the taxon index.

Usage

longPACFSingle(ps, main_factor, time_var, taxon, taxlevel = "Species",
  lag.max = 10)

Arguments

ps	(Required). A phyloseq-class.
main_factor	Character string. The name of the variable to map main factor in the plot (factor vector).
time_var	Character string. The name of the variable to map time in the plot (integer vector).
taxon	Numeric. The index of taxon to get the correlogram.
taxlevel	Character string. The taxonomy level for the plot title.
lag.max	Numeric. The maximum lags that PACF to be computed.

Value

ggplot2 object of PACF for one taxon according to the taxon index.

PratheepaJ/bootLong documentation built on April 5, 2020, 2:19 p.m.