PredictiveEcology/reproducible
Enhance Reproducibility of R Code

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PredictiveEcology/reproducible: Enhance Reproducibility of R Code
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API

API for PredictiveEcology/reproducible
Enhance Reproducibility of R Code

Global functions
.CacheFn1 Source code
.CacheVerboseFn1 Source code
.CopyCacheAtts Source code
.addChangedAttr Man page
.addChangedAttr,ANY-method Man page
.addSlashNToAllButFinalElement Source code
.addTagsRepo Source code
.addTagsToOutput Man page
.addTagsToOutput,ANY-method Man page
.archiveExtractBinary Man page Source code
.cacheMessage Man page
.cacheMessage,ANY-method Man page
.cacheMessageObjectToRetrieve Man page Source code
.cacheNumDefaultTags Source code
.cacheTableHashColName Source code
.cacheTableTagColName Source code
.callArchiveExtractFn Source code
.checkCacheRepo Man page
.checkCacheRepo,ANY-method Man page
.checkDeprecated Source code
.checkForSimilar Source code
.checkFunInDots Source code
.checkLocalSources Source code
.checkSumsUpdate Source code
.compareChecksumsAndFilesAddDirs Source code
.createCache Source code
.debugCache Man page Source code
.decodeMagicNumber Source code
.digest Man page
.digest,character-method Man page
.digestRasterLayer Source code
.doDigest Source code
.downloadErrorFn Source code
.extractFunction Source code
.file.move Man page Source code
.fileExtsKnown Source code
.findSimilar Source code
.fixNoFileExtension Source code
.fnCleanup Source code
.formalsNotInCurrentDots Man page Source code
.getColors Source code
.getFromRepo Source code
.getOtherFnNamesAndTags Source code
.grepSysCalls Man page Source code
.guessAtFile Source code
.guessAtTargetAndFun Man page Source code
.guessFileExtension Source code
.ignoreTagKeys Source code
.isArchive Source code
.isDevelVersion Source code
.isMemoised Man page Source code
.isRstudioServer Source code
.listFilesInArchive Man page Source code
.message Man page
.messageFunctionFn Man page Source code
.namesPostProcessFormals Source code
.onAttach Source code
.onLoad Source code
.onUnload Source code
.orderDotsUnderscoreFirst Man page Source code
.pkgEnv Man page
.preDigestByClass Man page
.preDigestByClass,ANY-method Man page
.prefix Man page Source code
.prepareFileBackedRaster Man page Source code
.prepareOutput Man page
.prepareOutput,ANY-method Man page
.purge Man page Source code
.readline Source code
.removeCacheAtts Man page Source code
.reproducibleTempCacheDir Source code
.reproducibleTempInputDir Source code
.reproducibleTempPath Source code
.requireNamespace Man page Source code
.robustDigest Man page
.robustDigest,ANY-method Man page
.robustDigest,Path-method Man page
.robustDigest,character-method Man page
.robustDigest,data.frame-method Man page
.robustDigest,environment-method Man page
.robustDigest,expression-method Man page
.robustDigest,function-method Man page
.robustDigest,integer-method Man page
.robustDigest,language-method Man page
.robustDigest,list-method Man page
.robustDigest,matrix-method Man page
.robustDigest,numeric-method Man page
.robustDigestFormatOnly Source code
.setSubAttrInList Man page Source code
.similarFilesInCheckSums Source code
.sortDotsUnderscoreFirst Man page Source code
.suffix Man page Source code
.tagsByClass Man page
.tagsByClass,ANY-method Man page
.testForArchiveExtract Man page Source code
.tryExtractFromArchive Source code
.unlistToCharacter Source code
.unrarPath Man page
.unwrap Man page Source code
.unwrap.default Man page Source code
.unwrap.environment Man page Source code
.unwrap.list Man page Source code
.updateTagsRepo Source code
.whichExtractFn Source code
.wrap Man page Source code
.wrap.default Man page Source code
.wrap.environment Man page Source code
.wrap.list Man page Source code
Cache Man page Source code
CacheDBFile Man page Source code
CacheDBFileSingle Source code
CacheDBFileSingleExt Source code
CacheDBFiles Source code
CacheDBTableName Man page Source code
CacheDigest Man page Source code
CacheGeo Man page Source code
CacheIsACache Man page Source code
CacheSize Source code
CacheStorageDir Man page Source code
CacheStoredFile Man page Source code
Checksums Man page
Checksums,character,logical-method Man page
Checksums,character,missing-method Man page
Copy Man page
Copy,ANY-method Man page
Copy,data.frame-method Man page
Copy,data.table-method Man page
Copy,list-method Man page
Copy,refClass-method Man page
ExportedMethods Man page
Filenames Man page
Filenames,ANY-method Man page
Filenames,Path-method Man page
Filenames,data.table-method Man page
Filenames,environment-method Man page
Filenames,list-method Man page
IndentRevert Source code
IndentUpdate Source code
LoadedCache Source code
LoadedCacheResult Source code
ObjToRetrieveFn Source code
Path-class Man page
RequireNamespaceFn Source code
SSL_REVOKE_BEST_EFFORT Source code
absoluteBase Source code
addCacheAttr Source code
addDataType Source code
allowMultipleFNs Source code
appendChecksumsTable Source code
appendChecksumsTableWithCS Source code
archiveExtractBinary Man page
asPath Man page Source code
asPath.character Man page Source code
asPath.null Man page Source code
assessDataType Man page Source code
assessDataType.default Man page Source code
assessDataTypeOuter Source code
assessGoogle Source code
attributesReassign Source code
basename2 Man page Source code
basenames3 Source code
bigRastersTmpFile Source code
bigRastersTmpFolder Source code
browserCond Source code
captureWarningsToAttr Source code
cat2file Source code
cc Man page Source code
checkAndMakeCloudFolderID Man page Source code
checkColors Source code
checkFutures Source code
checkPath Man page
checkPath,NULL,ANY-method Man page
checkPath,character,logical-method Man page
checkPath,character,missing-method Man page
checkPath,missing,ANY-method Man page
checkRelative Man page Source code
checksumsDirsOk Source code
clearCache Man page
clearCache,ANY-method Man page
cliCol Source code
cloudDownload Man page Source code
cloudDownloadRasterBackend Source code
cloudFolderFromCacheRepo Source code
cloudUploadFromCache Man page Source code
cloudUploadRasterBackends Source code
compareNA Man page Source code
convertDBbackendIfIncorrect Source code
convertPaths Man page Source code
convertRasterPaths Man page Source code
convertToSFwMessage Source code
copyFile Man page
copyFromDPtoReproducibleIPs Source code
copySingleFile Man page Source code
createCache Man page Source code
cropInputs Man page Source code
cropInputs.default Man page Source code
cropSF Source code
cropTo Man page Source code
currentFilesToChecksumsTable Source code
dataType2 Man page Source code
dbConnectAll Source code
dealWithArchive Source code
deprecated Man page
detectThreads Source code
determineFilename Man page Source code
determineNestedTags Source code
devModeFn1 Source code
dlErrorHandling Source code
dlGeneric Man page Source code
dlGoogle Man page Source code
downloadFile Man page Source code
downloadRemote Man page Source code
driveLs Source code
escapeRegexChars Source code
evalTheFun Source code
extntNA Source code
extractFileNOTtoChecksum Source code
extractFromArchive Man page Source code
extractFromCache Man page Source code
fastMask Man page Source code
fileExt Source code
filePathSansExt Source code
filenamesFromArchiveLst Source code
findFun Source code
fixErrors Man page Source code
fixErrors.default Man page Source code
fixErrorsIn Man page Source code
formals2 Source code
formals3 Source code
formatCheck Source code
gdalMask Man page Source code
gdalProject Man page Source code
gdalResample Man page Source code
gdalTransform Source code
getCacheRepos Source code
getDataFn Source code
getDrv Source code
getEnv Source code
getFunctionName2 Source code
getMethodAll Source code
getRelative Man page Source code
getTargetFilePath Source code
getTeamDrive Source code
guessAlsoExtract Source code
guessAtTarget Man page
hardLinkOrCopy Source code
identifyCHECKSUMStxtFile Source code
internetExists Man page Source code
is.naSpatial Source code
is.nulls Source code
isAbsolutePath Source code
isCI Source code
isCRSANY Source code
isCRSSF Source code
isCRSTerra Source code
isCRScharacter Source code
isDirectory Source code
isDollarOnlySqBr Source code
isDollarSqBrPkgColon Source code
isFile Source code
isGeomType Source code
isGoogleDriveDirectory Source code
isGoogleDriveURL Source code
isGoogleID Source code
isGridded Source code
isInteractive Man page Source code
isMac Source code
isNULLorNA Source code
isOrHasRaster Source code
isPkgColon Source code
isPkgColonFn Source code
isPolygons Source code
isRaster Source code
isSF Source code
isSpat Source code
isSpat2 Source code
isSpatVector Source code
isSpatial Source code
isSpatialAny Source code
isTRUEorForce Source code
isUpdated Man page Source code
isVector Source code
isWindows Man page Source code
keepCache Man page
keepCache,ANY-method Man page
keepOrigGeom Man page Source code
linkOrCopy Man page Source code
linkOrCopyUpdateOnly Source code
list2envAttempts Source code
listNamed Man page Source code
loadFile Man page Source code
loadFromCache Man page Source code
makeAbsolute Source code
makeMemoisable Man page Source code
makeMemoisable.data.table Man page Source code
makeMemoisable.default Man page Source code
makeRelative Man page Source code
makeVal Source code
maskInputs Man page Source code
maskInputs.default Source code
maskTo Man page Source code
matchCall Source code
maxFn Man page Source code
memoiseEnv Source code
mergeCache Man page
mergeCache,ANY-method Man page
messConvert Source code
messageCache Man page Source code
messageColoured Man page Source code
messageDF Man page Source code
messageDeclareError Source code
messagePreProcess Man page Source code
messagePrepInputs Man page Source code
messageQuestion Man page Source code
methodFormals Source code
milliseconds Source code
minFn Man page Source code
minmaxFn Source code
missingFiles Source code
modifyListPaths Source code
moveAttributes Source code
movedCache Man page Source code
nextNumericName Source code
nlayers2 Man page Source code
normPath Man page
normPath,NULL-method Man page
normPath,character-method Man page
normPath,list-method Man page
normPath,logical-method Man page
normPath,missing-method Man page
normPathRel Man page Source code
nullOr Source code
nullifyByArgName Source code
objSize Man page Source code
objSize.Path Source code
objSize.default Source code
objSize.environment Source code
objSize.list Source code
objSizeSession Man page Source code
on.exit2 Source code
onlyStorageFiles Source code
paddedFloatToChar Man page Source code
parseTags Source code
postProcess Man page Source code
postProcess.default Man page Source code
postProcess.list Man page Source code
postProcessTerra Man page
postProcessTo Man page Source code
postProcessToAssertions Source code
preProcess Man page Source code
preProcessParams Man page Source code
prepInputs Man page Source code
prepInputsAssertions Source code
process Source code
progressBarCode Source code
projectInputs Man page Source code
projectInputs.default Man page Source code
projectTo Man page Source code
rasterRead Man page Source code
rasterType Source code
readCheckSumFilePath Source code
readFrom Source code
rebuildColors Source code
recursiveEvalNamesOnly Source code
relativeToWhat Source code
remapFilenames Man page Source code
remapOldArgs Source code
removeDirs Source code
reportTime Source code
reproducible Man page
reproducible-package Man page
reproducibleOptions Man page Source code
retry Man page Source code
returnObjFromRepo Source code
revertClass Source code
rmFromCache Man page Source code
rmFromCloudFolder Source code
rndstr Source code
roundTo6Dec Source code
runChecksums Source code
sampRand Source code
saveDBFileSingle Source code
saveFilesInCacheFolder Source code
saveTo Source code
saveToCache Man page Source code
searchFull Man page Source code
searchFullEx Man page Source code
searchInRepos Source code
set.randomseed Man page Source code
setMinMaxIfNeeded Source code
setupArchive Source code
showCache Man page
showCache,ANY-method Man page
showCacheFast Source code
studyAreaName Man page
studyAreaName,ANY-method Man page
studyAreaName,character-method Man page
suffix Man page
suffixLockFile Source code
suffixMultipleDBFiles Source code
suppressWarningsSpecific Source code
switchDataTypes Source code
tagsSpatRaster Source code
tempdir2 Man page Source code
tempfile2 Man page Source code
testForArchiveExtract Man page
unmakeMemoisable Man page Source code
unmakeMemoisable.default Man page Source code
unrarPath Man page
unwrapRaster Source code
unwrapSpatRaster Source code
unwrapSpatVector Source code
updateArchiveWithGuess Source code
updateDstNoData Source code
updateFilenameSlots Man page Source code
updateFilenameSlots.default Man page Source code
updateFilenameSlots.environment Man page Source code
updateFilenameSlots.list Man page Source code
urlExists Man page Source code
useDBI Source code
values2 Man page Source code
vectorType Source code
verboseDF1 Source code
verboseDF2 Source code
verboseDF3 Source code
verboseMessage1 Source code
verboseMessage2 Source code
verboseMessage3 Source code
verboseTime Source code
whereInStack Source code
withoutFinalNumeric Source code
wrapSpatRaster Source code
wrapSpatVector Source code
writeChecksumsTable Source code
writeFuture Man page Source code
writeOutputs Man page Source code
writeOutputs.default Man page Source code
writeTo Man page Source code
PredictiveEcology/reproducible documentation built on Dec. 12, 2024, 7:26 p.m.

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