API for PriceLab/trenaSGM
trenaSGM: trena single gene model
| Global functions | |
|---|---|
| .FootprintDatabaseModelBuilder | Man page |
| .NoDnaModelBuilder | Man page |
| .RegionsMotifMatchingModelBuilder | Man page |
| .assembleFootprints | Source code |
| .multiQueryFootprints | Source code |
| .queryFootprints | Source code |
| .queryFootprintsFromDatabase | Source code |
| .replaceGeneSymbolsWithEnsemblGeneIDsInDataFrame | Source code |
| .replaceGeneSymbolsWithEnsemblGeneIDsInList | Source code |
| .runTrenaWithRegulatoryRegions | Source code |
| .runTrenaWithTFsOnly | Source code |
| .trenaSGM | Man page |
| FootprintDatabaseModelBuilder | Man page Source code |
| FootprintDatabaseModelBuilder-class | Man page |
| ModelBuilder | Man page Source code |
| NoDnaModelBuilder | Man page Source code |
| NoDnaModelBuilder-class | Man page |
| RegionsMotifMatchingModelBuilder | Man page Source code |
| RegionsMotifMatchingModelBuilder-class | Man page |
| allKnownTFs | Man page Source code |
| build | Man page |
| build,FootprintDatabaseModelBuilder-method | Man page |
| build,NoDnaModelBuilder-method | Man page |
| build,RegionsMotifMatchingModelBuilder-method | Man page |
| calculate | Man page |
| calculate,trenaSGM-method | Man page |
| execute.footprint.strategy | Man page |
| execute.footprint.strategy,trenaSGM-method | Man page |
| make.ensembl.geneSymbol.identifiers | Source code |
| printf | Man page Source code |
| roundNumericColumns | Man page Source code |
| show | Man page |
| show,FootprintDatabaseModelBuilder-method | Man page |
| show,NoDnaModelBuilder-method | Man page |
| show,RegionsMotifMatchingModelBuilder-method | Man page |
| staged.build | Man page |
| staged.build,FootprintDatabaseModelBuilder-method | Man page |
| summarizeModels | Man page |
| summarizeModels,trenaSGM-method | Man page |
| trenaSGM | Man page Source code |
| trenaSGM-class | Man page |
| trimModel | Man page Source code |
