Description Usage Arguments Value Examples
tell us what we need to know
1 |
genomeName |
hg38, mm10, ... |
targetGene |
in same vocabulary as rownames in the expression matrix |
quiet |
do or do not print progress information |
An object of the trenaSGM class
1 2 3 4 5 6 7 | if(interactive()){
load(system.file(package="trenaSGM", "extdata", "mayo.tcx.RData"))
pfms <- query(MotifDb, c("sapiens", "jaspar2018"))
sgm <- trenaSGM("hg38", "TREM2", mtx, pfms,
strategies=list(footprints="5000.5000.remapped"),
tfCorrelation=0.2)
}
|
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