trimModel: trim an expansive model to a more credible one, using...

Description Usage Arguments

View source: R/trenaSGM.R

Description

trim an expansive model to a more credible one, using parameterized voting scheme

Usage

1
trimModel(tbl.model, tbl.reg, votesNeeded = 3, tf.keepers = c())

Arguments

tbl.model

a data.frame, an expansive, unfiltered trena model data.frame, with perhaps > 200 tf rows

tbl.reg

a data.frame, included here only so that it can be returned, filtered to exclude binding sites for tfs which did not make it into the trimmed model

votesNeeded,

numeric, typically 2 or 3, at least this many votes, by any solver method, is required to keep

tf.keepers,

a character vector, keep these in the model no matter how well they performed. a tf in the model


PriceLab/trenaSGM documentation built on Oct. 5, 2020, 5:40 p.m.