calculate: create regulatory model of the gene, following all the...
In PriceLab/trenaSGM: trenaSGM: trena single gene model

Description Usage Arguments Value Examples

create regulatory model of the gene, following all the specified options

1 2	## S4 method for signature 'trenaSGM' calculate(obj, strategies)

`obj`	An object of class trenaSGM
`strategies`	a list of lists, specifying all the options to build one or more models

A list with a bunch of tables...

if(interactive()){
  pfms <- query2(MotifDb, c("sapiens", "jaspar2018"))
  load(system.file(package="trenaSGM", "extdata", "mayo.tcx.RData"))
  sgm <- trenaSGM("hg38", "TREM2", mtx, pfms,
                  strategies=list(footprints="5000.5000.remapped"),
                  tfCorrelation=0.3)
  calculate(sgm)
  }