Files in PriceLab/trenaSGM
trenaSGM: trena single gene model
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/FimoDatabaseModelBuilder.R-hidden
R/FootprintDatabaseModelBuilder.R
R/ModelBuilder.R
R/NoDnaModelBuilder.R
R/RegionsFimoModelBuilder.R-hidden
R/RegionsMotifMatchingModelBuilder.R
R/trenaSGM.R
R/utils.R
README.md
inst/extdata/ENSG00000095970.RData
inst/extdata/d12_rep2_erythro_ATAC-seq.RData
inst/extdata/enhancers.TREM2.RData
inst/extdata/mayo.tcx.new.RData
inst/extdata/papers/PredictingTheImpactOfPromoterVariabilityOnRegulatoryOutputs.pdf
inst/extdata/papers/sulfideResponsiveTranscriptionalRepressor.pdf
inst/extdata/placeholder
inst/extdata/sampleDataForTrimModel.RData
inst/extdata/tbl.model.testFormatting.RData
inst/extdata/tfCollections/3700.tsv
inst/extdata/tfCollections/44212.tsv
inst/extdata/tfCollections/7507.tsv
inst/extdata/tfCollections/GO_00037000_DNAbindingTranscriptionFactorActivityHuman.RData
inst/timingTests/Rprof.brain
inst/timingTests/Rprof.out
inst/timingTests/Rprof.placenta
inst/timingTests/footprintDatabases.R
inst/timingTests/timing-postgresFootprintQueries.log
inst/unitTests/disabled_test_FastFootprintDatabaseModelBuilder.R
inst/unitTests/disabled_test_RegionsMotifMatchingModelBuilder.R
inst/unitTests/disabled_test_pcaMax.R
inst/unitTests/test_FimoDatabaseModelBuilder.R
inst/unitTests/test_FootprintDatabaseModelBuilder.R
inst/unitTests/test_ModelBuilder.R
inst/unitTests/test_NoDnaModelBuilder.R
inst/unitTests/test_RegionsFimoMatchingModelBuilder.R
inst/unitTests/test_allKnownTFs.R
inst/unitTests/test_trenaSGM.R
inst/unitTests/test_utils.R
inst/unitTests/trem2.fp.models.RData
makefile
man/FootprintDatabaseModelBuilder-class.Rd
man/ModelBuilder-class.Rd
man/NoDnaModelBuilder-class.Rd
man/RegionsMotifMatchingModelBuilder-class.Rd
man/allKnownTFs.Rd
man/build.Rd
man/calculate.Rd
man/execute.footprint.strategy.Rd
man/printf.Rd
man/roundNumericColumns.Rd
man/show.Rd
man/staged.build.Rd
man/summarizeModels.Rd
man/trenaSGM-class.Rd
man/trimModel.Rd
